4 results found Sort:

nf-core
ampliseq nf-core
117
187
mit
152
Amplicon sequencing analysis workflow using DADA2 and QIIME2
16s 18s its edna rrna pacbio qiime2 nf-core illumina nextflow pipeline workflow iontorrent microbiome metagenomics metabarcoding amplicon-sequencing taxonomic-profiling taxonomic-classification
Created 2018-09-26
2,507 commits to master branch, last one 3 months ago
biocore
gemelli biocore
18
76
bsd-3-clause
7
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse ...
ctf rclr rpca qiime2 tempted joint-rpca microbiome compositional-data-analysis
Created 2019-02-14
359 commits to master branch, last one about a month ago
sbslee
dokdo sbslee
12
42
mit
4
A Python package for microbiome sequencing analysis with QIIME 2
api cli qiime2 visualization microbiome-sequencing-analysis
Created 2020-09-03
551 commits to master branch, last one about a year ago
cafferychen777
MicrobiomeStat cafferychen777
5
31
unknown
2
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
dada2 omics qiime2 16s-rrna phyloseq microbiome statistics metagenomes visualization microbiome-data longitudinal-data amplicon-sequencing microbiome-analysis microbiome-workflow metagenomic-analysis omics-data-integration
Created 2023-07-21
658 commits to main branch, last one 2 days ago