9 results found Sort:

microbiome
microbiome microbiome
55
293
other
32
microbiome R package
r hitchip phyloseq microbiome microbiology hitchip-atlas human-microbiome population-study microbiome-analysis
Created 2012-08-07
2,235 commits to master branch, last one 3 months ago
opencobra
cobratoolbox opencobra
323
260
other
32
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
cobra tutorial gap-filling metabolomics cobra-toolbox reconstruction transcriptomics human-metabolism metabolic-models strain-engineering microbiome-analysis metabolic-engineering omics-data-integration metabolic-reconstruction constraint-based-modeling
Created 2012-11-02
9,535 commits to master branch, last one 18 days ago
YuLab-SMU
MicrobiotaProcess YuLab-SMU
37
186
unknown
7
:microbe: A comprehensive R package for deep mining microbiome
rstats microbiome microbiome-data microbiome-analysis
Created 2019-03-01
1,343 commits to master branch, last one 4 months ago
qiita-spots
qiita qiita-spots
81
123
bsd-3-clause
20
Qiita - A multi-omics databasing effort
python microbiome microbiome-analysis
Created 2013-09-26
7,817 commits to master branch, last one 18 days ago
grimmlab
MicrobiomeBestPracticeReview grimmlab
39
114
mit
3
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
16s-rrna assembly pipeline biomedical microbiome metagenomics best-practices bioinformatics amplicon-sequencing microbiome-analysis microbiome-workflow
Created 2018-11-16
101 commits to master branch, last one 10 months ago
david-barnett
microViz david-barnett
11
114
gpl-3.0
5
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
r rstats microbiome microbiota microbiome-analysis
Created 2020-10-25
881 commits to main branch, last one 3 months ago
microsud
Tools-Microbiome-Analysis microsud
46
113
unknown
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A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
16s-rrna amplicon microbiota metagenomics microbiome-data amplicon-sequencing microbiome-analysis microbial-communities
Created 2017-08-08
169 commits to master branch, last one about a year ago
zoecastillo
microbiomeExplorer zoecastillo
20
70
other
9
The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph...
microbiome microbiome-analysis
Created 2020-07-27
37 commits to master branch, last one 2 years ago
cafferychen777
MicrobiomeStat cafferychen777
5
40
unknown
3
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
dada2 omics qiime2 16s-rrna phyloseq microbiome statistics metagenomes visualization microbiome-data longitudinal-data amplicon-sequencing microbiome-analysis microbiome-workflow metagenomic-analysis omics-data-integration
Created 2023-07-21
682 commits to main branch, last one about a month ago