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A genome visualization python package for comparative genomics
Created
2022-05-20
438 commits to main branch, last one about a month ago
microbiome R package
Created
2012-08-07
2,235 commits to master branch, last one 2 months ago
Rapid comparison and dereplication of genomes
Created
2016-09-27
276 commits to master branch, last one about a month ago
Build a partitioned pangenome graph from microbial genomes
Created
2017-10-20
2,215 commits to master branch, last one 2 months ago
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Created
2019-06-19
198 commits to main branch, last one 24 days ago
Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi....
Created
2018-10-23
1,522 commits to main branch, last one 2 hours ago
Rapid determination of appropriate reference genomes.
Created
2018-11-01
225 commits to main branch, last one 24 days ago
An easy-to-use C++ application to count bacterial colonies (i.e. CFU).
Created
2012-02-01
85 commits to master branch, last one 3 years ago
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Created
2017-05-12
927 commits to master branch, last one 6 months ago
Collection of commonly used RDP Tools for easy building
Created
2013-06-17
108 commits to master branch, last one 4 years ago
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
Created
2023-01-18
323 commits to main branch, last one about a month ago