31 results found Sort:

tseemann
abricate tseemann
95
398
gpl-2.0
28
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
contigs genomic-regions virulence-genes bioinformatics-tool antimicrobial-resistance-genes
Created 2014-07-17
244 commits to master branch, last one 4 years ago
lightdock
lightdock lightdock
45
328
gpl-3.0
12
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
dna docking protein peptides chemistry proteomics bioinformatics protein-design protein-docking molecular-biology protein-structure structural-biology swarm-intelligence bioinformatics-tool molecular-structures artificial-intelligence protein-dna-interactions structural-bioinformatics glowworm-swarm-optimization protein-protein-interaction
Created 2019-09-27
488 commits to master branch, last one about a year ago
sunduanchen
Scissor sunduanchen
35
214
gpl-3.0
3
Scissor package
data-mining bioinformatics-tool single-cell-analysis
Created 2020-04-11
79 commits to master branch, last one 3 years ago
inab
trimal inab
45
199
gpl-3.0
12
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
trimming bioinformatics-tool multiple-sequence-alignment
Created 2009-09-20
534 commits to trimAl branch, last one 11 days ago
GuyTeichman
RNAlysis GuyTeichman
13
132
mit
4
Analyze your RNA sequencing data without writing a single line of code
rnaseq rna-seq smallrna smallrna-seq bioinformatics gui-application transcriptomics rna-seq-analysis rna-seq-pipeline bioinformatics-tool bioinformatics-analysis bioinformatics-pipeline
Created 2019-06-20
3,425 commits to master branch, last one 2 months ago
KarchinLab
open-cravat KarchinLab
31
119
mit
20
A modular annotation tool for genomic variants
python python3 genomics javascript bioinformatics annotation-tool variant-analysis variant-annotation bioinformatics-tool variant-annotations genomic-data-analysis bioinformatics-pipeline
Created 2018-07-03
2,755 commits to master branch, last one 5 days ago
avrabyt
YouTube-Tutorials avrabyt
48
117
mit
6
📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈
openai python chatgpt3 langchain streamlit openai-api openai-gpt3 google-sheet python-webapp machinelearning python-beginners streamlit-web-app google-spreadsheet python-programming bioinformatics-tool streamlit-components bioinformatics-python streamlit-application machinelearning-python
Created 2021-12-31
449 commits to main branch, last one 6 days ago
telatin
seqfu2 telatin
9
114
gpl-3.0
3
:rocket: seqfu - Sequece Fastx Utilities
ngs fasta fastq bioconda genomics sequencing bioinformatics bioinformatics-tool
Created 2020-11-26
595 commits to main branch, last one 2 months ago
Superzchen
iLearnPlus Superzchen
33
106
unknown
5
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and...
python prediction deep-learning machine-learning feature-selection sequence-analysis automated-modelling bioinformatics-tool biomedical-data-analytics
Created 2020-10-22
86 commits to main branch, last one 11 months ago
bcgsc
RNA-Bloom bcgsc
7
103
other
10
:hibiscus: reference-free transcriptome assembly for short and long reads
rna-seq bulk-rna-seq denovo-assembly pacbio-sequencing bioinformatics-tool nanopore-sequencing single-cell-rna-seq
Created 2018-06-30
1,879 commits to master branch, last one about a year ago
PabloEnmanuelRamos
BioBlender21 PabloEnmanuelRamos
12
86
bsd-2-clause
14
Blender plugin to process biological data and molecular work.
python biology blender bioblender blender-addon bioinformatics bioinformatics-tool
Created 2020-04-09
225 commits to master branch, last one 3 years ago
imgag
ClinCNV imgag
4
83
mit
10
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
bioinformatics-tool copy-number-variation bioinformatics-algorithms
Created 2018-06-25
648 commits to master branch, last one about a month ago
chriscainx
mnnpy chriscainx
32
73
bsd-3-clause
5
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
mnn-correct batch-effects bioinformatics-tool single-cell-analysis mutual-nearest-neighbor biological-data-analysis
Created 2018-04-19
100 commits to master branch, last one 2 years ago
josiahseaman
FluentDNA josiahseaman
7
65
unknown
7
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinfo...
ddv dna msa fasta fluent protein liftover alignment fluentdna sequencing visualization bioinformatics chain-alignment fasta-sequences bioinformatics-tool
Created 2016-03-02
533 commits to python-master branch, last one 3 years ago
ShujiaHuang
geneview ShujiaHuang
8
65
gpl-3.0
5
Genomics data visualization in Python by using matplotlib.
python plotting matplotlib visualization bioinformatics data-visualization bioinformatics-tool genomics-data-visualization
Created 2016-01-24
352 commits to master branch, last one about a year ago
JetBrains-Research
snakecharm JetBrains-Research
7
61
mit
5
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
python pycharm intellij snakemake intellij-plugins bioinformatics-tool bioinformatics-pipeline
Created 2019-01-11
1,109 commits to master branch, last one 4 months ago
rcedgar
reseek rcedgar
3
59
gpl-3.0
2
Protein structure alignment and search algorithm
bioinformatics search-algorithm protein-sequences protein-structure bioinformatics-tool computational-biology bioinformatics-algorithms
Created 2024-05-21
673 commits to master branch, last one 24 days ago
bcgsc
tigmint bcgsc
13
58
gpl-3.0
17
⛓ Correct misassemblies using linked AND long reads
10xgenomics linked-reads bioinformatics genome-assembly genome-scaffolding bioinformatics-tool misassembly-correction
Created 2017-07-22
227 commits to master branch, last one about a year ago
muellan
metacache muellan
13
58
gpl-3.0
7
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
fasta fastq genome refseq taxonomy long-reads metagenomes ncbi-refseq metagenomics read-mapping dna-sequences bioinformatics classification metagenomic-data short-read-mapper bioinformatics-tool metagenomic-analysis genomic-data-analysis bioinformatics-algorithms metagenomic-classification
Created 2017-02-07
1,033 commits to master branch, last one 8 days ago
ncsa
NEAT ncsa
15
53
other
5
NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
bioinformatics bioinformatics-tool
Created 2021-03-19
2,364 commits to main branch, last one about a month ago
ebi-jdispatcher
webservice-clients ebi-jdispatcher
23
52
apache-2.0
4
A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
webservice-client bioinformatics-tool bioinformatics-analysis
Created 2017-09-22
1,829 commits to master branch, last one 8 months ago
JamieHeather
stitchr JamieHeather
10
51
mit
3
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
tcr immunology bioinformatics-tool
Created 2018-11-09
144 commits to main branch, last one 18 days ago
bobeobibo
phigaro bobeobibo
15
51
mit
4
Phigaro is a scalable command-line tool for predicting phages and prophages
phage phages genomics prophage bioinformatics genomic-regions bioinformatics-tool genomic-data-analysis bioinformatics-analysis bioinformatics-pipeline biological-data-analysis
Created 2017-08-21
271 commits to master branch, last one about a year ago
clemgoub
TE-Aid clemgoub
8
48
other
2
Annotation helper tool for the manual curation of transposable element consensus sequences
ltr tir blast protein dot-plot structure annotation transposons bioinformatics-tool transposable-elements
Created 2021-04-28
125 commits to main branch, last one 29 days ago
treangenlab
methphaser treangenlab
1
46
mit
3
MethPhaser: methylation-based haplotype phasing of human genomes
methylation haplotype-blocks bioinformatics-tool
Created 2023-04-19
39 commits to main branch, last one 27 days ago
labstructbioinf
localpdb labstructbioinf
5
42
mit
0
Python package to manage protein structures and their annotations
bioinformatics-tool bioinformatics-databases structural-bioinformatics
Created 2020-04-22
128 commits to master branch, last one about a year ago
bcgsc
goldrush bcgsc
2
39
gpl-3.0
10
Linear-time de novo Long Read Assembler
bioinformatics genome-assembly bioinformatics-tool long-read-sequencing
Created 2021-09-28
258 commits to main branch, last one 2 months ago
akcorut
kGWASflow akcorut
9
38
mit
2
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
ngs gwas conda kmers genomics pipeline workflow snakemake gwas-tools sciworkflows gwas-pipeline bioinformatics association-mapping bioinformatics-tool structural-variation bioinformatics-pipeline
Created 2021-10-25
413 commits to main branch, last one 11 months ago
Kukuster
SumStatsRehab Kukuster
6
38
mit
2
GWAS summary statistics files QC tool
gwas compbio sumstats data-prep gwas-pipeline bioinformatics data-preparation data-preprocessing summary-statistics bioinformatics-tool computational-biology gwas-summary-statistics
Created 2021-09-22
68 commits to master branch, last one 3 months ago
genotoul-bioinfo
Binette genotoul-bioinfo
0
33
gpl-3.0
3
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
metagenomics microbiology bioinformatics-tool metagenomics-binning
Created 2023-01-18
360 commits to main branch, last one 13 days ago