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A complete pipeline for metagenomic analysis
Created
2018-03-15
1,302 commits to master branch, last one 4 months ago
Assembly and binning of metagenomes
Created
2018-05-22
2,243 commits to master branch, last one about a month ago
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Created
2020-04-26
779 commits to main branch, last one 24 days ago
Software for prediction of plasmid sequences in metagenomic assemblies
Created
2017-01-12
89 commits to master branch, last one 3 years ago
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halp...
Created
2015-08-04
181 commits to master branch, last one 3 years ago
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Created
2017-02-07
1,028 commits to master branch, last one 6 months ago
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Created
2019-09-12
337 commits to master branch, last one 8 months ago
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Created
2023-07-21
642 commits to main branch, last one 2 days ago