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LSTM_Chem topazape

55

116

unlicense

9

Implementation of the paper - Generative Recurrent Networks for De Novo Drug Design.

rnn lstm keras denovo python3 tensorflow2 cheminformatics chemoinformatics machine-learning

Created 2018-04-20

80 commits to master branch, last one 2 years ago

sirius sirius-ms

17

78

agpl-3.0

8

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

java denovo sirius ms-data science fingerid ms-spectra csi-fingerid mass-spectra metabolomics bioinformatics cheminformatics isotope-pattern mass-spectrometry molecular-formulas fragmentation-trees molecular-structures structure-elucidation

Created 2017-06-16

4,333 commits to stable branch, last one 26 days ago

LSTM_peptides alexarnimueller

26

70

other

5

Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.

rnn lstm denovo machine-learning peptide-sequences

Created 2017-11-06

80 commits to master branch, last one 2 years ago

Recycler Shamir-Lab

7

58

bsd-3-clause

9

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halp...

denovo plasmid assembly recycler metagenomes assembly-graph circular-sequences

Created 2015-08-04

181 commits to master branch, last one 3 years ago

bacass nf-core

38

55

mit

146

Simple bacterial assembly and annotation pipeline

denovo nf-core assembly nanopore nextflow pipeline workflow denovo-assembly genome-assembly hybrid-assembly bacterial-genomes nanopore-sequencing

Created 2019-01-31

633 commits to master branch, last one 5 days ago

sirius-libs sirius-ms

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51

unknown

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sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java

denovo ms-data ms-spectra java-library metabolomics bioinformatics cheminformatics mass-spectrometry molecular-formulas scientific-computing

Created 2017-03-16

3,933 commits to stable branch, last one 11 months ago