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NanoSim bcgsc

59

265

other

19

Nanopore sequence read simulator

genome simulator transcriptome oxford-nanopore nanopore-sequencing

Created 2015-11-05

364 commits to master branch, last one about a month ago

mag nf-core

124

232

mit

180

Assembly and binning of metagenomes

binning nf-core assembly nanopore nextflow pipeline workflow annotation metagenomes metagenomics bioinformatics nanopore-sequencing long-read-sequencing

Created 2018-05-22

2,659 commits to master branch, last one 11 days ago

bambu GoekeLab

24

206

gpl-3.0

6

Reference-guided transcript discovery and quantification for long read RNA-Seq data

r bambu rna-seq nanopore long-reads bioconductor transcriptomics rna-seq-analysis nanopore-sequencing transcript-quantification transcript-reconstruction

Created 2020-02-07

2,175 commits to devel branch, last one 2 months ago

xpore GoekeLab

23

147

mit

8

Identification of differential RNA modifications from nanopore direct RNA sequencing

rna python rna-seq genomics nanopore modification transcriptomics machine-learning rna-modifications nanopore-sequencing

Created 2020-01-06

367 commits to master branch, last one about a year ago

deepsignal bioinfomaticsCSU

21

114

gpl-3.0

2

Detecting methylation using signal-level features from Nanopore sequencing reads

tensorflow epigenetics methylation bioinformatics nanopore-sequencing

Created 2018-12-11

209 commits to master branch, last one about a year ago

RNA-Bloom bcgsc

7

103

other

10

:hibiscus: reference-free transcriptome assembly for short and long reads

rna-seq bulk-rna-seq denovo-assembly pacbio-sequencing bioinformatics-tool nanopore-sequencing single-cell-rna-seq

Created 2018-06-30

1,879 commits to master branch, last one about a year ago

master_of_pores biocorecrg

17

101

mit

8

Nextflow pipeline for analysis of direct RNA Nanopore reads

docker nextflow singularity nextflow-pipeline nanopore-sequencing nanopore-analysis-pipeline

Created 2019-10-10

399 commits to MOP4-dev branch, last one 4 days ago

arcs bcgsc

16

94

gpl-3.0

22

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

graph genome science scaffold assembler 10xgenomics c-plus-plus pacbio-data bioinformatics oxford-nanopore nanopore-sequencing

Created 2016-06-06

272 commits to master branch, last one 5 months ago

bacass nf-core

55

73

mit

169

Simple bacterial assembly and annotation pipeline

denovo nf-core assembly nanopore nextflow pipeline workflow denovo-assembly genome-assembly hybrid-assembly bacterial-genomes nanopore-sequencing

Created 2019-01-31

726 commits to master branch, last one 4 months ago

deepsignal-plant PengNi

12

58

gpl-3.0

4

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

plant pytorch methylation bioinformatics nanopore-sequencing

Created 2019-11-19

146 commits to master branch, last one 9 months ago

RawHash CMU-SAFARI

7

55

gpl-3.0

7

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al...

rawhash seeding nanopore raw-signal hash-tables read-mapping segmentation contamination nanopore-data bioinformatics nanopore-reads event-detection genome-analysis nanopore-minion nanopore-sequencing relative-abundances nanopore-analysis-pipeline raw-nanopore-signal-analysis

Created 2023-01-20

46 commits to main branch, last one 5 months ago