12 results found Sort:

bcgsc
NanoSim bcgsc
51
217
other
16
Nanopore sequence read simulator
genome simulator transcriptome oxford-nanopore nanopore-sequencing
Created 2015-11-05
343 commits to master branch, last one 6 months ago
nf-core
mag nf-core
102
189
mit
157
Assembly and binning of metagenomes
binning nf-core assembly nanopore nextflow pipeline workflow annotation metagenomes metagenomics bioinformatics nanopore-sequencing long-read-sequencing
Created 2018-05-22
2,180 commits to master branch, last one 16 days ago
GoekeLab
bambu GoekeLab
22
167
gpl-3.0
7
Reference-guided transcript discovery and quantification for long read RNA-Seq data
r bambu rna-seq nanopore long-reads bioconductor transcriptomics rna-seq-analysis nanopore-sequencing transcript-quantification transcript-reconstruction
Created 2020-02-07
2,144 commits to devel branch, last one 2 months ago
GoekeLab
xpore GoekeLab
22
131
mit
9
Identification of differential RNA modifications from nanopore direct RNA sequencing
rna python rna-seq genomics nanopore modification transcriptomics machine-learning rna-modifications nanopore-sequencing
Created 2020-01-06
367 commits to master branch, last one 7 months ago
bioinfomaticsCSU
deepsignal bioinfomaticsCSU
21
108
gpl-3.0
3
Detecting methylation using signal-level features from Nanopore sequencing reads
tensorflow epigenetics methylation bioinformatics nanopore-sequencing
Created 2018-12-11
209 commits to master branch, last one about a year ago
bcgsc
arcs bcgsc
16
90
gpl-3.0
25
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
graph genome science scaffold assembler 10xgenomics c-plus-plus pacbio-data bioinformatics oxford-nanopore nanopore-sequencing
Created 2016-06-06
268 commits to master branch, last one 3 months ago
biocorecrg
master_of_pores biocorecrg
15
86
mit
9
Nextflow pipeline for analysis of direct RNA Nanopore reads
docker nextflow singularity nextflow-pipeline nanopore-sequencing nanopore-analysis-pipeline
Created 2019-10-10
292 commits to v1.1 branch, last one about a year ago
bcgsc
RNA-Bloom bcgsc
7
85
other
11
:hibiscus: reference-free transcriptome assembly for short and long reads
rna-seq bulk-rna-seq denovo-assembly pacbio-sequencing bioinformatics-tool nanopore-sequencing single-cell-rna-seq
Created 2018-06-30
1,879 commits to master branch, last one 5 months ago
nf-core
bacass nf-core
38
55
mit
146
Simple bacterial assembly and annotation pipeline
denovo nf-core assembly nanopore nextflow pipeline workflow denovo-assembly genome-assembly hybrid-assembly bacterial-genomes nanopore-sequencing
Created 2019-01-31
633 commits to master branch, last one 3 days ago
PengNi
deepsignal-plant PengNi
12
53
gpl-3.0
5
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
plant pytorch methylation bioinformatics nanopore-sequencing
Created 2019-11-19
145 commits to master branch, last one 10 months ago
CMU-SAFARI
RawHash CMU-SAFARI
5
39
gpl-3.0
8
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computation...
rawhash seeding nanopore raw-signal hash-tables read-mapping segmentation contamination nanopore-data bioinformatics nanopore-reads event-detection genome-analysis nanopore-minion nanopore-sequencing relative-abundances nanopore-analysis-pipeline raw-nanopore-signal-analysis
Created 2023-01-20
36 commits to main branch, last one about a month ago
sirselim
guppy_parameter_optimiser sirselim
4
31
gpl-3.0
3
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
gpu guppy basecalling optimisation nanopore-sequencing
Created 2022-02-09
28 commits to main branch, last one 2 years ago