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Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Created
2019-04-08
1,612 commits to master branch, last one 2 months ago
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...
Created
2018-12-11
84 commits to master branch, last one 7 months ago
Convert Seurat objects to 10x Genomics Loupe files.
Created
2023-08-23
35 commits to main branch, last one 13 days ago
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Created
2016-06-06
272 commits to master branch, last one 3 months ago
Code for the spatialLIBD R/Bioconductor package and shiny app
Created
2019-12-04
786 commits to devel branch, last one 2 months ago
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Created
2019-12-04
214 commits to master branch, last one 9 months ago
⛓ Correct misassemblies using linked AND long reads
Created
2017-07-22
227 commits to master branch, last one about a year ago
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Created
2022-02-23
701 commits to dev branch, last one about a month ago