Search Results - RepositoryStats

174

220

mit

137

A single-cell RNAseq pipeline for 10X genomics data

alevin nf-core rna-seq bustools kallisto nextflow pipeline workflow star-solo cellranger 10xgenomics single-cell 10x-genomics

Created 2019-04-08

1,612 commits to master branch, last one 20 days ago

iCellR rezakj

19

121

unknown

13

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...

3d umap icellr dropout cite-seq scrna-seq scvdj-seq clustering imputation pseudotime 10xgenomics normalization diffusion-maps intractive-graph batch-normalization clustering-algorithm singel-cell-sequencing cell-type-classification

Created 2018-12-11

84 commits to master branch, last one 5 months ago

loupeR 10XGenomics

15

106

other

10

Convert Seurat objects to 10x Genomics Loupe files.

r-package 10xgenomics single-cell-genomics

Created 2023-08-23

30 commits to main branch, last one 18 days ago

arcs bcgsc

16

91

gpl-3.0

23

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

graph genome science scaffold assembler 10xgenomics c-plus-plus pacbio-data bioinformatics oxford-nanopore nanopore-sequencing

Created 2016-06-06

272 commits to master branch, last one about a month ago

spatialLIBD LieberInstitute

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87

unknown

20

Code for the spatialLIBD R/Bioconductor package and shiny app

golem shiny rstats visium 10xgenomics spatiallibd bioconductor spatialexperiment spatial-transcriptomics

Created 2019-12-04

786 commits to devel branch, last one 14 days ago

HumanPilot LieberInstitute

31

74

unknown

18

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

brain dlpfc human rstats visium biorxiv analysis 10xgenomics spatial-transcriptomics

Created 2019-12-04

214 commits to master branch, last one 7 months ago

tigmint bcgsc

13

56

gpl-3.0

18

⛓ Correct misassemblies using linked AND long reads

10xgenomics linked-reads bioinformatics genome-assembly genome-scaffolding bioinformatics-tool misassembly-correction

Created 2017-07-22

227 commits to master branch, last one about a year ago

spatialvi nf-core

20

52

mit

158

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics

Created 2022-02-23

694 commits to dev branch, last one 14 days ago