Search Results - RepositoryStats

169

212

mit

136

A single-cell RNAseq pipeline for 10X genomics data

alevin nf-core rna-seq bustools kallisto nextflow pipeline workflow star-solo cellranger 10xgenomics single-cell 10x-genomics

Created 2019-04-08

1,443 commits to master branch, last one 2 months ago

iCellR rezakj

19

121

unknown

13

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptom...

3d umap icellr dropout cite-seq scrna-seq scvdj-seq clustering imputation pseudotime 10xgenomics normalization diffusion-maps intractive-graph batch-normalization clustering-algorithm singel-cell-sequencing cell-type-classification

Created 2018-12-11

84 commits to master branch, last one 3 months ago

loupeR 10XGenomics

15

97

other

10

Convert Seurat objects to 10x Genomics Loupe files.

r-package 10xgenomics single-cell-genomics

Created 2023-08-23

28 commits to main branch, last one 8 days ago

arcs bcgsc

16

91

gpl-3.0

25

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

graph genome science scaffold assembler 10xgenomics c-plus-plus pacbio-data bioinformatics oxford-nanopore nanopore-sequencing

Created 2016-06-06

272 commits to master branch, last one 15 hours ago

spatialLIBD LieberInstitute

17

83

unknown

20

Code for the spatialLIBD R/Bioconductor package and shiny app

golem shiny rstats visium 10xgenomics spatiallibd bioconductor spatialexperiment spatial-transcriptomics

Created 2019-12-04

713 commits to devel branch, last one 6 days ago

HumanPilot LieberInstitute

29

71

unknown

18

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

brain dlpfc human rstats visium biorxiv analysis 10xgenomics spatial-transcriptomics

Created 2019-12-04

214 commits to master branch, last one 5 months ago

tigmint bcgsc

13

55

gpl-3.0

18

⛓ Correct misassemblies using linked AND long reads

10xgenomics linked-reads bioinformatics genome-assembly genome-scaffolding bioinformatics-tool misassembly-correction

Created 2017-07-22

227 commits to master branch, last one about a year ago

spatialvi nf-core

19

51

mit

158

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics

Created 2022-02-23

668 commits to dev branch, last one 11 days ago