3 results found Sort:

nf-core
scrnaseq nf-core
186
256
mit
149
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
alevin nf-core rna-seq bustools kallisto nextflow pipeline workflow star-solo cellranger 10xgenomics single-cell 10x-genomics
Created 2019-04-08
1,761 commits to master branch, last one 14 days ago
gavinha
TitanCNA gavinha
36
97
gpl-3.0
3
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
hmm 10x-genomics genome-sequencing tumor-heterogeneity copy-number-variation
Created 2015-01-21
292 commits to master branch, last one 3 years ago
nf-core
spatialvi nf-core
21
59
mit
171
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics
Created 2022-02-23
708 commits to dev branch, last one 11 days ago