4 results found Sort:

nf-core
scrnaseq nf-core
186
258
mit
156
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
alevin nf-core rna-seq bustools kallisto nextflow pipeline workflow star-solo cellranger 10xgenomics single-cell 10x-genomics
Created 2019-04-08
1,761 commits to master branch, last one 15 days ago
pachterlab
kb_python pachterlab
24
160
bsd-2-clause
11
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
bustools kallisto kb-python scrna-seq single-cell-rna-seq rna-velocity-estimation
Created 2019-10-14
610 commits to master branch, last one 5 days ago
basilkhuder
Seurat-to-RNA-Velocity basilkhuder
27
137
unknown
6
A guide to using a Seurat object in conjunction with RNA Velocity
scvelo seurat anndata bustools kallisto velocyto kb-python rna-velocity integrating-loom kallisto-bustools
Created 2020-01-08
99 commits to master branch, last one 3 years ago
pachterlab
kallistobustools pachterlab
29
117
mit
18
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
rna-seq bustools kallisto single-cell
Created 2019-06-13
649 commits to master branch, last one 3 years ago