nf-core / scrnaseq

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Date Created 2019-04-08 (6 years ago)

Commits 1,761 (last one about a month ago)

Stargazers 265 (1 this week)

Watchers 154 (-1 this week)

Forks 188

License mit

Ranking

RepositoryStats indexes 643,405 repositories, of these nf-core/scrnaseq is ranked #155,138 (76th percentile) for total stargazers, and #10,152 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #6/90.

nf-core/scrnaseq is also tagged with popular topics, for these it's ranked: workflow (#276/776), pipeline (#120/464)

Other Information

nf-core/scrnaseq has 5 open pull requests on Github, 207 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 61 open issues and 141 closed issues.

There have been 17 releases, the latest one was published on 2025-03-11 (about a month ago) with the name 4.0.0.

Homepage URL: https://nf-co.re/scrnaseq

All Topics

alevin nf-core rna-seq bustools kallisto nextflow pipeline workflow star-solo cellranger 10xgenomics single-cell 10x-genomics

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Github watchers over time, collection started in '23

Recent Commit History

1,379 commits on the default branch (master) since jan '22

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Languages

The primary language is Nextflow but there's also others...

updated: 2025-04-25 @ 11:43pm, id: 180151993 / R_kgDOCrzmuQ