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Repository to host tool-specific module files for the Nextflow DSL2 community!
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
Repository to host tool-specific module files for the Nextflow DSL2 community!
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
Repository to host tool-specific module files for the Nextflow DSL2 community!
A single cell transcriptomics pipeline for QC, integration and making the data presentable
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Repository to host tool-specific module files for the Nextflow DSL2 community!
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the ...
A single cell transcriptomics pipeline for QC, integration and making the data presentable
A single cell transcriptomics pipeline for QC, integration and making the data presentable
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Repository to host tool-specific module files for the Nextflow DSL2 community!
A comprehensive cancer DNA/RNA analysis and reporting pipeline
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the ...
