4 results found Sort:

nf-core
sarek nf-core
423
419
mit
134
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
conda gatk4 cancer nf-core somatic genomics germline nextflow pipeline workflow annotation containers target-panels bioinformatics pre-processing variant-calling reproducible-research whole-exome-sequencing whole-genome-sequencing next-generation-sequencing
Created 2019-04-30
7,940 commits to master branch, last one about a month ago
gencorefacility
variant-calling-pipeline-gatk4 gencorefacility
46
54
unknown
2
Variant Calling Pipeline Using GATK4 and Nextflow
gatk4 genomics nextflow bioinformatics variant-calling bioinformatics-pipeline
Created 2020-03-19
11 commits to master branch, last one 4 years ago
nf-core
rnavar nf-core
35
41
mit
109
gatk4 RNA variant calling pipeline
rna gatk4 rnaseq nf-core worflow nextflow pipeline workflow variant-calling
Created 2021-05-12
283 commits to master branch, last one 2 years ago
digo4
Clinical-Genomics digo4
11
39
mit
3
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
fastp gatk4 fastqc picard bowtie2 bwa-mem varscan bcftools cutadapt gatk-cnv samtools freebayes trimgalore trimmomatic gatk-bestpractices gatk4-haplotypecaller gatk-joint-variant-calling-workflow
Created 2023-12-22
69 commits to main branch, last one about a year ago