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C++ htslib/bwa-mem/fermi interface for interrogating sequence data

fermi htslib bwa-mem c-plus-plus sequence-alignments

Created 2015-05-07

616 commits to master branch, last one 7 months ago

14

112

mit

9

BWA-MEME: Faster BWA-MEM2 using learned-index

ngs bwa-mem bwa-mem2 bwa-meme genomics learned-index bioinformatics machine-learning short-read-mapping alignment-algorithm

Created 2021-09-01

129 commits to master branch, last one 5 months ago

11

40

mit

3

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

fastp gatk4 fastqc picard bowtie2 bwa-mem varscan bcftools cutadapt gatk-cnv samtools freebayes trimgalore trimmomatic gatk-bestpractices gatk4-haplotypecaller gatk-joint-variant-calling-workflow

Created 2023-12-22

69 commits to main branch, last one 11 months ago