6 results found Sort:

tanghaibao
jcvi tanghaibao
186
756
bsd-2-clause
36
Python library to facilitate genome assembly, annotation, and comparative genomics
blast allmaps synteny assembly genomics genetic-maps bioinformatics variant-calling genome-sequencing sequence-alignments comparative-genomics
Created 2010-12-01
3,038 commits to main branch, last one 22 days ago
seqan
seqan seqan
171
481
other
42
SeqAn's official repository.
bwt simd blast cpp14 fasta seqan htslib sam-bam indexing alignment suffixarray fastq-format bioinfomatics high-performance sequence-alignments
Created 2012-10-25
8,340 commits to main branch, last one 2 months ago
walaj
SeqLib walaj
36
132
other
19
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
fermi htslib bwa-mem c-plus-plus sequence-alignments
Created 2015-05-07
616 commits to master branch, last one 5 months ago
debbiemarkslab
plmc debbiemarkslab
37
102
mit
9
Inference of couplings in proteins and RNAs from sequence variation
protein-sequences protein-structure undirected-graphs protein-interaction sequence-alignments
Created 2016-01-09
52 commits to master branch, last one about a year ago
drostlab
orthologr drostlab
27
88
gpl-2.0
12
Genome wide orthology inference and dNdS estimation
r blast species biomartr genomics proteome comparative blast-searches entire-genomes codon-alignment dnds-estimation genomics-studies retrieve-genomes comparing-genomes orthologous-genes sequence-alignment orthology-inference sequence-alignments comparative-genomics comparative-genomics-studies
Created 2014-07-08
1,087 commits to master branch, last one about a year ago
pymodproject
pymod pymodproject
18
73
lgpl-2.1
8
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
pymol pymol-plugin bioinformatics homology-modeling protein-sequences protein-structures sequence-alignments similarity-searches structural-alignments
Created 2016-04-04
74 commits to master branch, last one 5 months ago