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Python library to facilitate genome assembly, annotation, and comparative genomics
Created
2010-12-01
3,027 commits to main branch, last one 23 hours ago
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Created
2010-09-22
1,504 commits to master branch, last one 2 months ago
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Created
2014-05-15
419 commits to master branch, last one 8 months ago
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Created
2019-04-30
7,370 commits to master branch, last one about a month ago
Bayesian haplotype-based mutation calling
Created
2015-02-04
5,045 commits to develop branch, last one 10 months ago
PEPPER-Margin-DeepVariant
Created
2019-05-10
1,281 commits to r0.8 branch, last one about a year ago
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Created
2021-03-30
586 commits to main branch, last one about a month ago
Fast and accurate gene fusion detection from RNA-Seq data
Created
2017-10-23
694 commits to master branch, last one about a year ago
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output...
Created
2019-06-20
1,149 commits to master branch, last one about a year ago
A tool set for short variant discovery in genetic sequence data.
Created
2013-10-03
1,333 commits to master branch, last one 3 years ago
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Created
2017-07-21
276 commits to rbDev branch, last one 3 years ago
Graph realignment tools for structural variants
Created
2017-11-24
33 commits to master branch, last one about a year ago
Sequana: a set of Snakemake NGS pipelines
Created
2016-03-07
6,337 commits to main branch, last one 3 months ago
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Created
2015-01-08
354 commits to master branch, last one 3 years ago
GATK RNA-Seq Variant Calling in Nextflow
Created
2017-02-28
171 commits to master branch, last one 2 years ago
Long read production pipelines
Created
2019-05-14
519 commits to main branch, last one a day ago
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Created
2020-04-08
355 commits to master branch, last one 5 months ago
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
Created
2016-07-13
1,564 commits to develop branch, last one 3 months ago
Assembly and intrahost/low-frequency variant calling for viral samples
Created
2020-03-30
2,788 commits to master branch, last one about a year ago
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
Created
2019-03-11
549 commits to master branch, last one 3 years ago
xHLA: Fast and accurate HLA typing from short read sequence data
Created
2017-06-20
160 commits to master branch, last one 6 years ago
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Created
2018-06-14
362 commits to main branch, last one 10 days ago
Genome inference from a population reference graph
Created
2015-04-10
1,359 commits to main branch, last one 2 years ago
High performance data storage for importing, querying and transforming variants.
Created
2018-08-03
1,950 commits to master branch, last one 3 months ago
Toolkit for calling structural variants using short or long reads
Created
2019-10-30
476 commits to master branch, last one 2 months ago
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Created
2019-09-04
1,126 commits to main branch, last one 2 days ago
Simple pileup-based variant caller
Created
2024-03-31
15 commits to master branch, last one 2 months ago
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
Created
2020-05-06
530 commits to master branch, last one 3 months ago
Call and score variants from WGS/WES of rare disease patients.
Created
2021-06-21
2,510 commits to master branch, last one about a month ago
vcfdist: Accurately benchmarking phased variant calls
Created
2022-03-22
495 commits to master branch, last one 18 days ago