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Structural variation caller using third generation sequencing
Created
2015-10-25
262 commits to master branch, last one about a month ago
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Created
2019-05-09
622 commits to master branch, last one about a month ago
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
Created
2017-09-29
437 commits to master branch, last one 3 years ago
Fast and accurate de novo assembler for long reads
Created
2019-01-09
111 commits to master branch, last one about a month ago
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Created
2016-09-01
668 commits to master branch, last one 2 years ago
Long read / genome alignment software
Created
2020-02-11
987 commits to master branch, last one 13 days ago
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Created
2021-03-30
586 commits to main branch, last one about a month ago
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
Created
2018-03-05
81 commits to master branch, last one 13 hours ago
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Created
2016-11-11
824 commits to master branch, last one 2 years ago
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Created
2018-09-26
2,409 commits to master branch, last one 2 months ago
Sequana: a set of Snakemake NGS pipelines
Created
2016-03-07
6,337 commits to main branch, last one 3 months ago
Technology agnostic long read analysis pipeline for transcriptomes
Created
2018-04-03
744 commits to master branch, last one 5 months ago
Ultra-fast de novo assembler using long noisy reads
Created
2015-12-12
80 commits to master branch, last one 3 years ago
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Created
2020-04-15
1,322 commits to master branch, last one 8 days ago
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
Created
2016-07-13
1,564 commits to develop branch, last one 3 months ago
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
Created
2018-07-12
144 commits to master branch, last one about a year ago
An accurate and ultra-fast hybrid genome assembler
Created
2019-03-04
50 commits to master branch, last one 3 years ago
Long Reads Annotation pipeline
Created
2016-10-26
600 commits to master branch, last one 2 years ago
Long-reads Gap-free Chromosome-scale Assembler
Created
2020-04-01
30 commits to master branch, last one about a year ago
Lima - Demultiplex Barcoded PacBio Samples
Created
2017-09-07
64 commits to master branch, last one 6 months ago
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Created
2017-08-08
400 commits to master branch, last one 4 months ago
ClairS - a deep-learning method for long-read somatic small variant calling
Created
2021-07-29
689 commits to main branch, last one about a month ago
A Python library to visualize and analyze long-read transcriptomes
Created
2019-11-19
541 commits to master branch, last one 3 months ago
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Created
2019-08-06
459 commits to master branch, last one 3 months ago
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Created
2023-11-07
110 commits to main branch, last one about a month ago
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Created
2022-11-29
216 commits to main branch, last one 6 days ago