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crypto-ecosystems electric-capital

1.4k

1.6k

other

54

A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems

taxonomy blockchain cryptocurrency decentralization crypto-ecosystems

Created 2019-08-02

3,630 commits to master branch, last one 8 days ago

MMseqs2 soedinglab

201

1.5k

mit

31

MMseqs2: ultra fast and sensitive search and clustering suite

blast mmseqs linclust taxonomy alignment metagenomics bioinformatics profile-search sequence-search sequence-clustering

Created 2016-07-20

6,480 commits to master branch, last one 13 days ago

GTDBTk Ecogenomics

82

486

gpl-3.0

23

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

archaea bacteria taxonomy metagenomics nomenclature phylogenetics bioinformatics species-assignments

Created 2016-11-29

962 commits to master branch, last one 19 days ago

dada2 benjjneb

144

478

lgpl-3.0

39

Accurate sample inference from amplicon data with single nucleotide resolution

amplicon taxonomy microbiome bioconductor metagenomics metabarcoding bioinformatics

Created 2014-12-17

798 commits to master branch, last one 18 days ago

laravel-categories rinvex

68

463

mit

15

Rinvex Categorizable is a polymorphic Laravel package, for category management. You can categorize any eloquent model with ease, and utilize the power of Nested Sets, and the awesomeness of Sluggable,...

php laravel taxonomy categories classification

Created 2017-04-08

343 commits to master branch, last one about a year ago

vulnerability-rating-taxonomy bugcrowd

88

455

apache-2.0

124

Bugcrowd’s baseline priority ratings for common security vulnerabilities

vrt rating bugcrowd taxonomy vulnerabilities

Created 2017-04-13

168 commits to master branch, last one about a month ago

taxonkit shenwei356

32

387

mit

8

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

lca taxid lineage taxdump taxonkit taxonomy bioinformatics cross-platform

Created 2016-11-01

266 commits to master branch, last one about a month ago

kaiju bioinformatics-centre

67

273

gpl-3.0

15

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

taxonomy metagenomics bioinformatics taxonomic-classification next-generation-sequencing

Created 2015-11-16

249 commits to master branch, last one 4 months ago

taxize ropensci

61

272

other

34

A taxonomic toolbelt for R

r api data rstats taxize biology taxonomy r-package darwincore api-wrapper biodiversity nomenclature

Created 2011-05-19

2,342 commits to master branch, last one 8 days ago

misp-taxonomies MISP

135

265

other

43

Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

malware incident security taxonomy adversary machine-tags misp-taxonomy classification misp-taxonomies incident-response incident-taxonomy information-exchange enisa-threat-taxonomy incident-classification government-classification-markings

Created 2015-11-19

1,241 commits to main branch, last one 13 days ago

pyani widdowquinn

55

199

mit

12

Application and Python module for average nucleotide identity analyses of microbes.

ani taxonomy bioinformatics classification taxonomy-assignment average-nucleotide-identity

Created 2014-12-30

2,041 commits to master branch, last one 2 months ago

OnenoteTaggingKit WetHat

16

196

ms-pl

13

OneNote (desktop) add-in to manage OneNote pages by page tags

tagging taxonomy onenote-addin classification facetted-search knowledgemanagement

Created 2017-07-11

1,007 commits to master branch, last one about a year ago

bioclip Imageomics

14

174

other

14

This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

clip taxonomy imageomics computer-vision knowledge-guided-machine-learning

Created 2023-11-30

442 commits to main branch, last one 2 months ago

popoto-examples Nhogs

54

147

lgpl-3.0

9

Contains a list of Popoto.js examples

graph cypher region schema markers taxonomy northwind query-viewer cypher-viewer css-customization

Created 2018-02-07

118 commits to master branch, last one 2 months ago

sequana sequana

27

146

bsd-3-clause

7

Sequana: a set of Snakemake NGS pipelines

ngs pacbio de-novo rna-seq coverage sequanix taxonomy snakemake variant-calling

Created 2016-03-07

6,389 commits to main branch, last one 2 months ago

wponion wponion

19

145

mit

7

~ Lightweight, Flexible & Rapid WP Development Framework ~

Created 2018-05-07

170 commits to master branch, last one 3 years ago

ncbitax2lin zyxue

29

141

mit

8

🐞 Convert NCBI taxonomy dump into lineages

ncbi pandas python lineage taxdump taxonomy ncbi-taxonomy

Created 2016-04-24

92 commits to master branch, last one 2 years ago

metacoder grunwaldlab

28

136

other

17

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

r pcr cran trees taxonomy hierarchical metabarcoding community-diversity

Created 2014-09-10

1,088 commits to master branch, last one 10 months ago

Metabuli steineggerlab

10

123

gpl-3.0

6

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

k-mer taxonomy metagenomics bioinformatics taxonomic-classification

Created 2020-09-09

3,053 commits to master branch, last one 2 months ago

rfishbase ropensci

42

113

unknown

21

R interface to the fishbase.org database

r fish rstats fishbase taxonomy r-package

Created 2011-11-18

648 commits to master branch, last one about a month ago

entity-command wp-cli

90

100

mit

10

Manage WordPress comments, menus, options, posts, sites, terms, and users.

cli menu meta page post site term user entity option wp-cli comment network session taxonomy wordpress hacktoberfest wp-cli-package

Created 2017-04-04

3,025 commits to main branch, last one 27 days ago

Laravel-Taxonomies Lecturize

30

98

mit

10

Simple, nestable Terms & Taxonomies (aka Categories) for Laravel.

laravel taxonomy categories taxonomies nestable-terms laravel-category laravel-taxonomies

Created 2015-08-29

179 commits to master branch, last one about a year ago

bio shenwei356

9

92

mit

7

A lightweight and high-performance bioinformatics package in Golang

golang package syncmer taxdump sequence taxonomy minimizer bioinformatics scaled-minhash

Created 2013-03-12

253 commits to master branch, last one 3 months ago

ganon pirovc

13

92

mit

4

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...

gtdb ncbi k-mer refseq genbank taxonomy microbiome minimizers bloom-filter metagenomics bioinformatics

Created 2018-08-30

690 commits to master branch, last one 10 months ago

SonataClassificationBundle sonata-project

115

90

mit

22

Symfony SonataClassificationBundle

php tag bundle sonata symfony category taxonomy symfony-bundle

Created 2013-10-02

1,181 commits to 4.x branch, last one 14 days ago

taxonworks SpeciesFileGroup

27

87

mit

24

Workbench for biodiversity informatics.

life ruby species describe taxonomy evolution collections biodiversity nomenclature biodiversity-informatics

Created 2013-09-03

27,787 commits to development branch, last one a day ago

fideslang IABTechLab

11

85

cc-by-4.0

13

Open-source description language for privacy to declare data types and data behaviors in your tech stack in order to simplify data privacy globally. Supports GDPR, CCPA, LGPD and ISO 19944.

taxonomy dataprivacy open-source privacy-tools privacy-engineering

Created 2021-08-03

173 commits to main branch, last one 3 months ago