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ncbitax2lin zyxue

29

139

mit

8

🐞 Convert NCBI taxonomy dump into lineages

ncbi pandas python lineage taxdump taxonomy ncbi-taxonomy

Created 2016-04-24

92 commits to master branch, last one 2 years ago

lambda seqan

20

77

other

13

LAMBDA – the Local Aligner for Massive Biological DatA

blast seqan alignment metagenomics ncbi-taxonomy bioinformatics blast-searches high-performance protein-sequences

Created 2015-06-22

759 commits to lambda3 branch, last one about a month ago

flextaxd FOI-Bioinformatics

7

64

gpl-3.0

3

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

16s gtdb ganon kraken2 amplicon centrifuge krakenuniq ncbi-database ncbi-taxonomy custom-database custom-taxonomy taxonomic-classification taxonomic-classifications metagenomic-classification

Created 2019-06-20

215 commits to master branch, last one 10 months ago