4 results found Sort:

pirovc
ganon pirovc
13
92
mit
4
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...
gtdb ncbi k-mer refseq genbank taxonomy microbiome minimizers bloom-filter metagenomics bioinformatics
Created 2018-08-30
690 commits to master branch, last one 10 months ago
FOI-Bioinformatics
flextaxd FOI-Bioinformatics
8
65
gpl-3.0
3
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
16s gtdb ganon kraken2 amplicon centrifuge krakenuniq ncbi-database ncbi-taxonomy custom-database custom-taxonomy taxonomic-classification taxonomic-classifications metagenomic-classification
Created 2019-06-20
215 commits to master branch, last one about a year ago
shenwei356
gtdb-taxdump shenwei356
2
50
mit
6
GTDB taxonomy taxdump files with trackable TaxIds
gtdb taxid taxdump taxonkit taxonomy bioinformatics
Created 2022-04-20
24 commits to main branch, last one 8 months ago
pirovc
multitax pirovc
3
40
mit
4
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
ott gtdb ncbi tree silva python taxonomy greengenes taxonomies bioinformatics pyhton-library open-tree-taxonomy biological-taxonomies
Created 2021-03-18
77 commits to main branch, last one about a year ago