4 results found Sort:

shenwei356
taxonkit shenwei356
32
387
mit
8
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
lca taxid lineage taxdump taxonkit taxonomy bioinformatics cross-platform
Created 2016-11-01
266 commits to master branch, last one about a month ago
zyxue
ncbitax2lin zyxue
29
141
mit
8
🐞 Convert NCBI taxonomy dump into lineages
ncbi pandas python lineage taxdump taxonomy ncbi-taxonomy
Created 2016-04-24
92 commits to master branch, last one 2 years ago
shenwei356
bio shenwei356
9
92
mit
7
A lightweight and high-performance bioinformatics package in Golang
golang package syncmer taxdump sequence taxonomy minimizer bioinformatics scaled-minhash
Created 2013-03-12
253 commits to master branch, last one 3 months ago
shenwei356
gtdb-taxdump shenwei356
2
50
mit
6
GTDB taxonomy taxdump files with trackable TaxIds
gtdb taxid taxdump taxonkit taxonomy bioinformatics
Created 2022-04-20
24 commits to main branch, last one 8 months ago