13 results found Sort:

kblin
ncbi-genome-download kblin
172
903
apache-2.0
34
Scripts to download genomes from the NCBI FTP servers
ncbi python biology genbank genomics command-line bioinformatics download-genomes
Created 2016-05-03
297 commits to master branch, last one 10 months ago
pachterlab
gget pachterlab
67
875
bsd-2-clause
11
🧬 gget enables efficient querying of genomic reference databases
gget ncbi blast archs4 enrichr ensembl uniprot alphafold databases reference alphafold2 enrichment-analysis
Created 2022-05-04
2,350 commits to main branch, last one 10 days ago
vanheeringen-lab
genomepy vanheeringen-lab
36
364
mit
6
genes and genomes at your fingertips
ncbi ucsc genome python ensembl bioconda
Created 2016-12-16
768 commits to master branch, last one about a year ago
ncbi
datasets ncbi
38
325
other
27
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
ncbi genomics-data
Created 2020-04-07
558 commits to master branch, last one 15 days ago
pirovc
genome_updater pirovc
13
132
mit
1
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
bash ncbi genome refseq genbank genomes database download genomics sequence bioinformatics
Created 2017-05-11
164 commits to master branch, last one 5 months ago
zyxue
ncbitax2lin zyxue
28
130
mit
8
🐞 Convert NCBI taxonomy dump into lineages
ncbi pandas python lineage taxdump taxonomy ncbi-taxonomy
Created 2016-04-24
92 commits to master branch, last one 2 years ago
ncbi
dbsnp ncbi
46
117
unknown
26
dbSNP
ncbi database genomics variations bioinformatics
Created 2017-05-08
190 commits to master branch, last one about a year ago
pirovc
ganon pirovc
12
83
mit
4
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...
gtdb ncbi k-mer refseq genbank taxonomy microbiome minimizers bloom-filter metagenomics bioinformatics
Created 2018-08-30
690 commits to master branch, last one 4 months ago
biocommons
eutils biocommons
26
56
apache-2.0
8
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
ncbi genomics bioinformatics
Created 2016-05-26
265 commits to main branch, last one 8 days ago
rcs333
VAPiD rcs333
15
50
mit
4
VAPiD: Viral Annotation and Identification Pipeline
ngs ncbi fasta virus biology genbank metadata virology annotations bioinformatics
Created 2016-12-15
355 commits to master branch, last one 2 years ago
ncbi
elastic-blast ncbi
13
40
other
16
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
ncbi blast bioinformatics
Created 2021-03-31
26 commits to master branch, last one 6 months ago
pirovc
multitax pirovc
2
35
mit
4
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
ott gtdb ncbi tree silva python taxonomy greengenes taxonomies bioinformatics pyhton-library open-tree-taxonomy biological-taxonomies
Created 2021-03-18
77 commits to main branch, last one about a year ago
MichaelSebero
Genetic-Trait-Detector MichaelSebero
2
30
gpl-3.0
4
This python script detects known traits in raw human genetic data.
dna snp data ncbi rsid tool genes match allele traits 23andme disease offline snpedia detector gedmatch genetics genotype mutation ancestrydna
Created 2023-02-04
31 commits to main branch, last one 3 months ago