3 results found Sort:

hodcroftlab
covariants hodcroftlab
110
320
agpl-3.0
19
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
covid19 covid-19 mutation sarscov2 tracking variants nextstrain sars-cov-2 mutation-distribution
Created 2020-10-01
3,373 commits to master branch, last one 11 days ago
cbg-ethz
V-pipe cbg-ethz
47
135
apache-2.0
9
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
hiv ngs conda virus genomics sarscov2 snakemake sars-cov-2 sequencing biohackeu20 biohackeu21 biohackeu22 biohackcovid20 bioinformatics bioinformatics-pipeline
Created 2017-04-10
1,200 commits to master branch, last one 19 days ago
maximilianh
multiSub maximilianh
2
35
gpl-3.0
3
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory...
ena tsv ncbi fasta genbank ncbi-ftp sarscov2 meta-data gisaid-xls sars-cov-2 gisaid-format gisaid-upload gisaid-uploader
Created 2021-04-02
74 commits to stable branch, last one 3 years ago