4 results found Sort:

saketkc
pysradb saketkc
52
316
bsd-3-clause
13
Package for fetching metadata and downloading data from SRA/ENA/GEO
ena sra ncbi-sra sratoolkit bioinformatics ncbi-sra-archive bioinformatics-pipeline
Created 2018-11-29
660 commits to develop branch, last one 2 months ago
nf-core
fetchngs nf-core
75
154
mit
100
Pipeline to fetch metadata and raw FastQ files from public databases
ena geo sra ddbj fastq nf-core synapse download nextflow pipeline workflow
Created 2021-06-03
1,079 commits to master branch, last one 10 months ago
NBISweden
EMBLmyGFF3 NBISweden
15
59
gpl-3.0
40
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
ena embl gff3 converter submission
Created 2016-08-04
364 commits to master branch, last one 9 months ago
maximilianh
multiSub maximilianh
2
35
gpl-3.0
4
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory...
ena tsv ncbi fasta genbank ncbi-ftp sarscov2 meta-data gisaid-xls sars-cov-2 gisaid-format gisaid-upload gisaid-uploader
Created 2021-04-02
74 commits to stable branch, last one 2 years ago