maximilianh / multiSub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

Date Created 2021-04-02 (3 years ago)

Commits 74 (last one 2 years ago)

Stargazers 35 (0 this week)

Watchers 4 (0 this week)

Forks 2

License gpl-3.0

Ranking

RepositoryStats indexes 565,600 repositories, of these maximilianh/multiSub is ranked #522,461 (8th percentile) for total stargazers, and #366,616 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #101,194/111,362.

Other Information

maximilianh/multiSub has Github issues enabled, there are 2 open issues and 1 closed issue.

There have been 1 release, the latest one was published on 2022-02-16 (2 years ago) with the name first release.

All Topics

ena tsv ncbi fasta genbank ncbi-ftp sarscov2 meta-data gisaid-xls sars-cov-2 gisaid-format gisaid-upload gisaid-uploader

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Recent Commit History

3 commits on the default branch (stable) since jan '22

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Languages

The primary language is Python but there's also others...

updated: 2024-07-01 @ 01:04am, id: 354056151 / R_kgDOFRp31w