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ncbi-genome-download kblin

173

905

apache-2.0

34

Scripts to download genomes from the NCBI FTP servers

ncbi python biology genbank genomics command-line bioinformatics download-genomes

Created 2016-05-03

297 commits to master branch, last one 11 months ago

poly bebop

68

658

mit

12

A Go package for engineering organisms.

Created 2020-05-29

487 commits to main branch, last one about a month ago

DnaFeaturesViewer Edinburgh-Genome-Foundry

89

571

mit

19

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

genbank visualization bioinformatics dna-visualization molecular-biology synthetic-biology

Created 2016-09-20

183 commits to master branch, last one 7 months ago

pyGenomeViz moshi4

20

243

mit

3

A genome visualization python package for comparative genomics

gff gff3 python genbank synteny genomics matplotlib microbiology visualization bioinformatics microbial-genomics comparative-genomics genomics-visualization

Created 2022-05-20

360 commits to main branch, last one about a month ago

pydna BjornFJohansson

40

160

other

11

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

dna gel fasta pydna python biology genbank jupyter anaconda biopython simulation bioinformatics gel-simulation gibson-assembly jupyter-notebook jupyter-notebooks cloning-strategies assembly-strategies gel-electrophoresis

Created 2015-02-04

1,736 commits to master branch, last one 2 months ago

genome_updater pirovc

13

135

mit

1

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

bash ncbi genome refseq genbank genomes database download genomics sequence bioinformatics

Created 2017-05-11

164 commits to master branch, last one 5 months ago

get_homologues eead-csic-compbio

25

102

other

18

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

fasta plants genbank pangene bacteria pangenome annotation clustering transcriptome

Created 2015-11-26

572 commits to master branch, last one 14 days ago

ganon pirovc

12

83

mit

4

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierar...

gtdb ncbi k-mer refseq genbank taxonomy microbiome minimizers bloom-filter metagenomics bioinformatics

Created 2018-08-30

690 commits to master branch, last one 4 months ago

Cenote-Taker2 mtisza1

7

57

mit

2

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

virus virome genbank hhblits hallmark hhsearch prophage discovery annotation metagenomes cenote-taker2 virus-discovery virus-evolution virus-sequences prophage-prediction cenote-unlimited-breadsticks

Created 2019-09-12

337 commits to master branch, last one 5 months ago