2 results found Sort:

CDCgov
seqsender CDCgov
14
35
apache-2.0
3
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
cdc sra ncird gisaid genbank ncbi-sra ncird-id biosample seqsender ncbi-genbank gisaid-format gisaid-upload gisaid-uploader ncbi-biosamples ncbi-submission cdc-influenza-division bioinformatics-pipeline
Created 2021-08-12
171 commits to master branch, last one 4 days ago
maximilianh
multiSub maximilianh
2
35
gpl-3.0
3
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory...
ena tsv ncbi fasta genbank ncbi-ftp sarscov2 meta-data gisaid-xls sars-cov-2 gisaid-format gisaid-upload gisaid-uploader
Created 2021-04-02
74 commits to stable branch, last one 3 years ago