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Package for fetching metadata and downloading data from SRA/ENA/GEO
Created
2018-11-29
662 commits to develop branch, last one about a month ago
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Created
2019-07-28
228 commits to main branch, last one 8 months ago
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
Created
2024-05-05
147 commits to main branch, last one 10 days ago
Pipeline to fetch metadata and raw FastQ files from public databases
Created
2021-06-03
1,079 commits to master branch, last one about a year ago
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Created
2019-07-11
1,483 commits to master branch, last one about a year ago
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Created
2021-08-12
170 commits to master branch, last one about a month ago
GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
Created
2023-07-12
102 commits to main branch, last one a day ago