15 results found Sort:

crazyhottommy
ChIP-seq-analysis crazyhottommy
299
791
mit
64
ChIP-seq analysis notes from Ming Tang
chip-seq histone-modifications transcription-factor-binding
Created 2015-06-12
364 commits to master branch, last one 8 months ago
macs3-project
MACS macs3-project
270
733
bsd-3-clause
47
MACS -- Model-based Analysis of ChIP-Seq
macs python atac-seq chip-seq dnase-seq peak-caller poisson-equation
Created 2011-03-02
1,701 commits to master branch, last one 2 months ago
deeptools
deepTools deeptools
216
719
other
41
Tools to process and analyze deep sequencing data.
ngs python rna-seq chip-seq genomics bioinformatics
Created 2013-07-08
3,515 commits to master branch, last one 3 months ago
maxplanck-ie
snakepipes maxplanck-ie
87
396
unknown
20
Customizable workflows based on snakemake and python for the analysis of NGS data
ngs hi-c rna-seq atac-seq chip-seq workflow snakemake bisulfite-sequencing
Created 2016-03-23
4,071 commits to master branch, last one 11 days ago
galaxyproject
training-material galaxyproject
952
330
mit
53
A collection of Galaxy-related training material
ngs rnaseq chip-seq training tutorial materials usegalaxy proteomics metagenomics hacktoberfest
Created 2015-06-29
31,576 commits to main branch, last one 13 hours ago
YuLab-SMU
ChIPseeker YuLab-SMU
77
233
unknown
19
:dart: ChIP peak Annotation, Comparison and Visualization
atac-seq chip-seq annotation comparison epigenetics epigenomics visualization
Created 2014-05-31
934 commits to devel branch, last one 8 days ago
nf-core
chipseq nf-core
151
211
mit
165
ChIP-seq peak-calling, QC and differential analysis pipeline.
chip macs2 nf-core chip-seq nextflow pipeline workflow peak-calling chromatin-immunoprecipitation
Created 2018-04-24
1,835 commits to master branch, last one 6 months ago
vanheeringen-lab
seq2science vanheeringen-lab
28
156
mit
5
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
ngs sra fastq rna-seq atac-seq chip-seq pipeline snakemake workflows bioinformatics reproducible-research bioinformatics-pipeline
Created 2019-07-11
1,483 commits to master branch, last one about a year ago
harbourlab
SparK harbourlab
21
111
unknown
5
Publication quality NGS track plotting
igv ngs rna-seq chip-seq plotting ngs-analysis bedgraph-files
Created 2019-11-14
334 commits to master branch, last one 2 years ago
kundajelab
chipseq_pipeline kundajelab
40
108
bsd-3-clause
39
AQUAS TF and histone ChIP-seq pipeline
chip-seq genomics chip-seq-pipelines
Created 2015-07-16
811 commits to master branch, last one 6 years ago
CostaLab
reg-gen CostaLab
30
108
other
9
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
ngs motif atac-seq chip-seq genomics dnase-seq footprinting bioinformatics motif-analysis differential-peak-calling
Created 2015-06-17
2,898 commits to master branch, last one about a year ago
nf-core
differentialabundance nf-core
45
78
mit
168
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
gsea limma shiny deseq2 nf-core rna-seq atac-seq chip-seq nextflow pipeline workflow microarray differential-abundance differential-expression
Created 2022-10-12
1,105 commits to master branch, last one 11 months ago
sajuukLyu
Protocols-4pub sajuukLyu
13
51
gpl-3.0
3
Multi-omics analysis protocols by Lyu.
wgbs rna-seq atac-seq chip-seq
Created 2021-03-08
49 commits to main branch, last one about a year ago
epigen
enrichment_analysis epigen
3
36
mit
2
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
rna-seq atac-seq chip-seq pipeline workflow gene-sets snakemake visualization bioinformatics genomic-regions enrichment-analysis gene-set-enrichment biomedical-data-science motif-enrichment-analysis
Created 2021-06-16
83 commits to main branch, last one 4 months ago
junjunlab
BioSeqUtils junjunlab
3
32
other
2
Extract Sequence from Genome According to Annotation File
gtf hic genome atac-seq chip-seq merip-seq transcript coverage-plot
Created 2023-03-03
86 commits to master branch, last one 9 days ago