7 results found Sort:

LengerichLab
CompBioDatasetsForMachineLearning LengerichLab
25
171
unknown
8
A Curated List of Computational Biology Datasets Suitable for Machine Learning
dataset datasets curated-list machine-learning computational-biology biomedical-data-science computational-biology-datasets
Created 2016-10-24
47 commits to master branch, last one about a year ago
beasygo1ng
OCT-Retinal-Layer-Segmenter beasygo1ng
7
67
unknown
3
UNet based model that segment retina to 8 layers in OCT images
images python segmentation deep-learning neural-networks keras-tensorflow machine-learning image-segmentation deep-neural-networks biomedical-data-science computer-vision-algorithms retinal-layer-segmentation biomedical-image-processing
Created 2022-06-20
18 commits to master branch, last one 2 years ago
aangelopoulos
im2im-uq aangelopoulos
10
55
mit
4
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
mri unet pytorch microscopy uncertainty machine-learning quantile-regression computational-biology computational-imaging uncertainty-estimation biomedical-data-science image-to-image-translation uncertainty-quantification biomedical-image-processing
Created 2021-05-30
152 commits to main branch, last one 2 years ago
epigen
atacseq_pipeline epigen
2
53
mit
3
Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
ngs bash python atac-seq pipeline workflow snakemake bioinformatics biomedical-data-science
Created 2021-03-22
173 commits to main branch, last one about a month ago
BorgwardtLab
S3M BorgwardtLab
8
53
mit
5
A software package for statistically significant shapelet mining
shapelets biomedical time-series time-series-analysis biomedical-data-science time-series-analysis-tool significant-pattern-mining
Created 2018-03-05
325 commits to master branch, last one 2 years ago
epigen
enrichment_analysis epigen
3
36
mit
2
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
rna-seq atac-seq chip-seq pipeline workflow gene-sets snakemake visualization bioinformatics genomic-regions enrichment-analysis gene-set-enrichment biomedical-data-science motif-enrichment-analysis
Created 2021-06-16
83 commits to main branch, last one 4 months ago
jvwilliams23
pyssam jvwilliams23
3
32
agpl-3.0
3
A Python library for biomedical statistical shape and appearance modelling.
python biomedical-data-science statistical-shape-model biomedical-image-processing
Created 2022-12-09
105 commits to main branch, last one 10 months ago