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13

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

gsea ksea ptm-sea gene-sets ptm-sites ptm-signatures phosphoproteomics ptm-enrichment-analysis pathway-enrichment-analysis

Created 2016-10-13

101 commits to master branch, last one 2 months ago

14

70

other

9

MSigDB gene sets for multiple organisms in a tidy data format

gsea msigdb genomics pathways gene-sets pathway-analysis enrichment-analysis

Created 2018-04-02

66 commits to main branch, last one a day ago

25

64

bsd-3-clause

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BioBombe: Sequentially compressed gene expression features enhances biological signatures

tcga hetnet msigdb network biobombe gene-sets autoencoder compression gene-expression

Created 2018-03-22

234 commits to master branch, last one 3 years ago

9

57

gpl-3.0

5

Lightweight Iterative Gene set Enrichment in R

cran gsea rstats gene-sets enrichment bioinformatics pathway-enrichment-analysis

Created 2015-09-26

54 commits to master branch, last one 2 months ago