9 results found Sort:

PoisonAlien
maftools PoisonAlien
218
431
mit
22
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
r tcga genomics maf-files bioinformatics cancer-genomics cancer-genome-atlas
Created 2016-01-06
823 commits to master branch, last one 17 days ago
BioinformaticsFMRP
TCGAbiolinks BioinformaticsFMRP
109
282
unknown
25
TCGAbiolinks
r gdc bioc tcga tcga-data bioconductor tcgabiolinks integrative-analysis
Created 2015-03-02
28,940 commits to master branch, last one 2 months ago
MarvinLer
tcga_segmentation MarvinLer
35
114
agpl-3.0
2
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
wsi tcga miccai pathology tcga-data segmentation data-efficient histopathology medical-imaging image-segmentation tumor-segmentation whole-slide-imaging computational-pathology slide-image-segmentation multiple-instance-learning weakly-supervised-learning
Created 2020-04-07
36 commits to master branch, last one 2 years ago
ropensci
UCSCXenaTools ropensci
12
100
gpl-3.0
6
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
r ccle icgc tcga toil ucsc treehouse ucsc-xena api-client downloader bioinformatics
Created 2019-03-31
258 commits to master branch, last one 5 months ago
Bioconductor
GenomicDataCommons Bioconductor
23
82
unknown
19
Provide R access to the NCI Genomic Data Commons portal.
r nci tcga cancer genomics vignette api-client bioconductor data-science core-services bioinformatics
Created 2016-06-08
605 commits to devel branch, last one about a month ago
ayueme
easyTCGA ayueme
10
81
other
1
Make TCGA download and prepare easy!
r tcga bioinformatics
Created 2023-04-19
32 commits to main branch, last one 2 months ago
waldronlab
MultiAssayExperiment waldronlab
32
67
unknown
17
Bioconductor package for management of multi-assay data
r tcga genomics nci-itcr bioconductor bioconductor-package
Created 2013-07-22
1,719 commits to devel branch, last one 21 days ago
greenelab
BioBombe greenelab
25
63
bsd-3-clause
6
BioBombe: Sequentially compressed gene expression features enhances biological signatures
tcga hetnet msigdb network biobombe gene-sets autoencoder compression gene-expression
Created 2018-03-22
234 commits to master branch, last one 3 years ago
iVis-at-Bilkent
pathway-mapper iVis-at-Bilkent
28
55
agpl-3.0
13
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
tcga graphviz pathways bioinformatics cancer-genomics cancer-pathways systems-biology pathway-analysis network-visualization
Created 2016-05-27
834 commits to master branch, last one 3 months ago