31 results found Sort:

Unix, R and python tools for genomics and data science
Created 2015-09-14
600 commits to master branch, last one 24 days ago
638
745
agpl-3.0
53
cBioPortal for Cancer Genomics
Created 2015-03-18
20,644 commits to master branch, last one a day ago
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Created 2016-01-06
833 commits to master branch, last one 4 months ago
139
458
bsd-3-clause
34
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Created 2013-11-15
1,423 commits to main branch, last one 16 days ago
49
317
apache-2.0
24
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created 2014-09-26
532 commits to bloody branch, last one 4 years ago
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Created 2016-07-07
45 commits to master branch, last one 10 days ago
72
295
other
20
Chromosome visualization for the web
Created 2015-02-04
3,293 commits to master branch, last one 25 days ago
40
275
mit
8
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Created 2018-08-07
280 commits to master branch, last one 10 days ago
53
197
bsd-2-clause
11
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Created 2015-04-09
1,902 commits to master branch, last one 27 days ago
70
188
gpl-3.0
17
Lollipop-style mutation diagrams for annotating genetic variations.
Created 2014-09-11
96 commits to master branch, last one 6 months ago
A visualization grammar and GPU-accelerated toolkit for genomic data
Created 2018-10-19
1,837 commits to master branch, last one about a month ago
Haplotype-aware CNV analysis from single-cell RNA-seq
Created 2021-05-25
962 commits to main branch, last one 16 days ago
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in e...
Created 2018-08-30
461 commits to master branch, last one about a month ago
33
154
other
13
Microassembly based somatic variant caller for NGS data
Created 2016-02-03
172 commits to v1.1.x branch, last one 2 years ago
React Frontend of cBioPortal :tada:
Created 2016-08-25
11,846 commits to master branch, last one 4 days ago
What you need to process the Quarterly DepMap-Omics releases from Terra
Created 2019-05-08
2,677 commits to master branch, last one 3 days ago
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file)....
Created 2018-08-27
329 commits to master branch, last one 3 days ago
Snakemake-based workflow for detecting structural variants in genomic data
Created 2017-04-10
475 commits to master branch, last one about a month ago
19
70
unknown
7
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Created 2018-03-12
232 commits to master branch, last one 9 months ago
REVOLVER - Repeated Evolution in Cancer
Created 2018-03-20
191 commits to master branch, last one 2 years ago
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Created 2019-03-06
622 commits to master branch, last one 13 days ago
20
61
mit
22
identifying mutational significance in cancer genomes
Created 2013-09-11
70 commits to master branch, last one 2 years ago
Python package to annotate and visualize gene fusions.
Created 2016-10-03
301 commits to master branch, last one 5 months ago
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Created 2016-05-27
834 commits to master branch, last one 12 months ago
9
56
apache-2.0
9
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Created 2015-07-29
144 commits to master branch, last one 3 years ago
17
53
unknown
8
Bioinformatics on GCP, AWS or Azure
Created 2016-10-04
565 commits to master branch, last one 8 days ago
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Created 2014-08-15
3,870 commits to staging branch, last one 2 years ago
Identifying tumor cells at the single-cell level using machine learning
Created 2020-08-28
122 commits to master branch, last one 4 months ago