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Unix, R and python tools for genomics and data science
Created
2015-09-14
598 commits to master branch, last one about a month ago
cBioPortal for Cancer Genomics
Created
2015-03-18
20,579 commits to master branch, last one 3 days ago
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Created
2016-01-06
833 commits to master branch, last one 2 months ago
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Created
2013-11-15
1,414 commits to main branch, last one 18 days ago
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created
2014-09-26
532 commits to bloody branch, last one 4 years ago
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Created
2016-07-07
43 commits to master branch, last one about a year ago
Chromosome visualization for the web
Created
2015-02-04
3,246 commits to master branch, last one about a month ago
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Created
2018-08-07
277 commits to master branch, last one about a year ago
Personal Cancer Genome Reporter (PCGR)
Created
2017-03-20
1,207 commits to main branch, last one 3 months ago
An ensemble approach to accurately detect somatic mutations using SomaticSeq
Created
2015-04-09
1,888 commits to master branch, last one 6 days ago
Lollipop-style mutation diagrams for annotating genetic variations.
Created
2014-09-11
96 commits to master branch, last one 5 months ago
A visualization grammar and GPU-accelerated toolkit for genomic data
Created
2018-10-19
1,828 commits to master branch, last one about a month ago
Haplotype-aware CNV analysis from single-cell RNA-seq
Created
2021-05-25
961 commits to main branch, last one about a month ago
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in e...
Created
2018-08-30
458 commits to master branch, last one about a month ago
Microassembly based somatic variant caller for NGS data
Created
2016-02-03
172 commits to v1.1.x branch, last one 2 years ago
What you need to process the Quarterly DepMap-Omics releases from Terra
Created
2019-05-08
2,647 commits to master branch, last one 2 months ago
React Frontend of cBioPortal :tada:
Created
2016-08-25
11,817 commits to master branch, last one 2 days ago
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file)....
Created
2018-08-27
316 commits to master branch, last one 19 days ago
Snakemake-based workflow for detecting structural variants in genomic data
Created
2017-04-10
474 commits to master branch, last one 11 months ago
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Created
2018-03-12
232 commits to master branch, last one 8 months ago
REVOLVER - Repeated Evolution in Cancer
Created
2018-03-20
191 commits to master branch, last one 2 years ago
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Created
2019-03-06
620 commits to master branch, last one about a month ago
Python package to annotate and visualize gene fusions.
Created
2016-10-03
301 commits to master branch, last one 4 months ago
identifying mutational significance in cancer genomes
Created
2013-09-11
70 commits to master branch, last one 2 years ago
Cancer Predisposition Sequencing Reporter (CPSR)
Created
2018-08-16
316 commits to main branch, last one 3 months ago
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Created
2016-05-27
834 commits to master branch, last one 10 months ago
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Created
2015-07-29
144 commits to master branch, last one 3 years ago
Bioinformatics on GCP, AWS or Azure
Created
2016-10-04
564 commits to master branch, last one 29 days ago
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Created
2014-08-15
3,870 commits to staging branch, last one 2 years ago
Identifying tumor cells at the single-cell level using machine learning
Created
2020-08-28
122 commits to master branch, last one 2 months ago