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PureCN lima1

32

127

artistic-2.0

7

Copy number calling and variant classification using targeted short read sequencing

loh copy-number tumor-purity cell-free-dna tumor-heterogeneity bioconductor-package tumor-mutational-burden

Created 2017-08-04

1,281 commits to devel branch, last one about a month ago

DGR-MIL ChongQingNoSubway

4

112

mit

3

Code for paper: DGR-MIL: Exploring Diverse Global Representation in Multiple Instance Learning for Whole Slide Image Classification [ECCV 2024]

transformer histopathology self-attention tumor-detection tumor-heterogeneity whole-slide-imaging tumor-classification multiple-instance-learning weakly-supervised-learning histopathology-image-analysis

Created 2024-06-24

18 commits to main branch, last one about a month ago

TitanCNA gavinha

36

94

gpl-3.0

3

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

hmm 10x-genomics genome-sequencing tumor-heterogeneity copy-number-variation

Created 2015-01-21

292 commits to master branch, last one 3 years ago

SCEVAN AntonioDeFalco

25

92

gpl-3.0

4

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of mali...

scrna-seq aneuploidy copynumber single-cell scrna-pipeline clonal-analysis tumor-evolution clonal-evolution microenvironment scrna-seq-analysis tumor-heterogeneity tumor-classification copy-number-variation subclonal-deconvolution subclone-identification

Created 2021-07-05

215 commits to main branch, last one 4 months ago

Palimpsest FunGeST

19

69

unknown

8

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

r nmf genomics clonality driver-events visualization bioinformatics nmf-extraction cancer-genomics cancer-research tumor-evolution somatic-mutations tumor-heterogeneity signature-extraction structural-variation mutational-signatures bioinformatics-analysis structural-variant-signatures

Created 2018-03-12

232 commits to master branch, last one 5 months ago