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QuPath - Bioimage analysis & digital pathology
Created
2016-08-28
3,573 commits to main branch, last one 2 days ago
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Created
2020-04-01
119 commits to master branch, last one 2 months ago
Cancer metastasis detection with neural conditional random field (NCRF)
Created
2018-06-04
60 commits to master branch, last one 3 years ago
Program for the analysis and visualization of whole-slide images in digital pathology
Created
2015-05-05
615 commits to develop branch, last one 9 months ago
Read and write TIFF files
Created
2020-02-22
560 commits to master branch, last one 10 days ago
C library for reading virtual slide images
Created
2010-08-09
2,627 commits to main branch, last one 18 days ago
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Publ...
Created
2011-10-04
22,075 commits to develop branch, last one 10 days ago
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Created
2020-05-28
665 commits to develop branch, last one 3 days ago
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
Created
2020-11-05
131 commits to master branch, last one 3 months ago
Digital pathology image viewer with support for human/machine generated annotations and markups.
Created
2016-08-14
3,026 commits to master branch, last one about a month ago
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Created
2019-09-13
2,697 commits to master branch, last one 3 months ago
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
pytorch
ai-ready
datasets
multiplex
pathology
stitching
cell-biology
segmentation
deep-learning
pathology-gan
pathology-image
super-resolution
cell-segmentation
digital-pathology
image-segmentation
multitask-learning
whole-slide-imaging
immunohistochemistry
cloud-native-applications
immunohistochemical-images
Created
2021-04-15
443 commits to main branch, last one 3 days ago
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
Created
2020-04-07
36 commits to master branch, last one 2 years ago
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
Created
2023-08-19
34 commits to main branch, last one about a month ago
a browser-based DICOM viewer
Created
2020-04-01
218 commits to master branch, last one 6 months ago
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Created
2021-09-07
627 commits to main branch, last one 4 days ago
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Created
2017-09-11
47 commits to master branch, last one 2 years ago
Cytomine-Core is the main web server implementing the Cytomine API
Created
2014-02-01
3,900 commits to master branch, last one about a year ago
Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
Created
2021-03-15
29 commits to main branch, last one 2 years ago
:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
Created
2018-02-08
191 commits to master branch, last one 4 years ago
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
Created
2022-08-19
160 commits to main branch, last one 4 months ago
An open source online platform for collaborative image labeling of almost everything
Created
2019-10-15
1,215 commits to master branch, last one 23 hours ago
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
Created
2020-09-03
1 commits to master branch, last one 3 years ago
Python library for processing whole slide images (WSIs) in sdpc format
Created
2022-08-29
47 commits to main branch, last one 3 months ago