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QuPath - Bioimage analysis & digital pathology
Created
2016-08-28
3,573 commits to main branch, last one 2 days ago
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Created
2020-04-01
119 commits to master branch, last one 2 months ago
A framework for high-performance medical image processing, neural network inference and visualization
Created
2014-03-18
3,767 commits to master branch, last one 2 months ago
Tools for computational pathology
Created
2019-07-31
1,011 commits to master branch, last one 2 months ago
Library for Digital Pathology Image Processing
Created
2020-05-09
1,477 commits to main branch, last one 2 months ago
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Created
2020-05-28
665 commits to develop branch, last one 3 days ago
cuCIM - RAPIDS GPU-accelerated image processing library
Created
2021-04-09
499 commits to branch-24.08 branch, last one 4 days ago
Digital pathology image viewer with support for human/machine generated annotations and markups.
Created
2016-08-14
3,026 commits to master branch, last one about a month ago
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Created
2024-02-02
20 commits to main branch, last one 13 days ago
A vision-language foundation model for computational pathology - Nature Medicine
Created
2023-12-31
10 commits to main branch, last one 2 months ago
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
pytorch
ai-ready
datasets
multiplex
pathology
stitching
cell-biology
segmentation
deep-learning
pathology-gan
pathology-image
super-resolution
cell-segmentation
digital-pathology
image-segmentation
multitask-learning
whole-slide-imaging
immunohistochemistry
cloud-native-applications
immunohistochemical-images
Created
2021-04-15
443 commits to main branch, last one 3 days ago
⚡ Open-source software for deep learning-based digital pathology
Created
2019-07-09
491 commits to master branch, last one 14 days ago
Interoperable web-based slide microscopy viewer and annotation tool
Created
2021-02-02
170 commits to master branch, last one about a month ago
Stain normalization tools for histological analysis and computational pathology
Created
2020-12-22
188 commits to main branch, last one about a year ago
PAthological QUpath Obsession - QuPath and Python conversations
Created
2020-07-06
613 commits to main branch, last one 26 days ago
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep...
Created
2019-01-11
290 commits to master branch, last one 2 years ago
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Created
2023-04-17
12 commits to main branch, last one about a year ago
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Created
2017-09-11
47 commits to master branch, last one 2 years ago
TiffSlide - cloud native openslide-python replacement based on tifffile
Created
2021-03-18
393 commits to main branch, last one 4 months ago
Cytomine-Core is the main web server implementing the Cytomine API
Created
2014-02-01
3,900 commits to master branch, last one about a year ago
Encoder-Decoder Cell and Nuclei segmentation models
Created
2022-01-22
320 commits to main branch, last one 8 months ago
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
Created
2021-02-04
141 commits to histo branch, last one 2 years ago
🔬 Code-free deep segmentation for computational pathology
Created
2021-09-30
265 commits to main branch, last one 14 days ago
WSI classification
Created
2023-11-12
20 commits to main branch, last one 2 months ago