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Open source tools for computational pathology - Nature BME
Created
2020-04-01
121 commits to master branch, last one 16 days ago
QuPath - Open-source bioimage analysis for research
Created
2016-08-28
4,103 commits to main branch, last one a day ago
A framework for high-performance medical image processing, neural network inference and visualization
Created
2014-03-18
3,814 commits to master branch, last one 5 days ago
Tools for computational pathology
Created
2019-07-31
1,384 commits to master branch, last one about a month ago
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Created
2020-05-28
702 commits to develop branch, last one 9 days ago
Library for Digital Pathology Image Processing
Created
2020-05-09
1,482 commits to main branch, last one 2 months ago
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Created
2024-02-02
27 commits to main branch, last one 3 months ago
cuCIM - RAPIDS GPU-accelerated image processing library
Created
2021-04-09
544 commits to branch-25.02 branch, last one 10 days ago
A vision-language foundation model for computational pathology - Nature Medicine
Created
2023-12-31
14 commits to main branch, last one 4 months ago
Digital pathology image viewer with support for human/machine generated annotations and markups.
Created
2016-08-14
3,028 commits to master branch, last one about a month ago
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
pytorch
ai-ready
datasets
multiplex
pathology
stitching
cell-biology
segmentation
deep-learning
pathology-gan
pathology-image
super-resolution
cell-segmentation
digital-pathology
image-segmentation
multitask-learning
whole-slide-imaging
immunohistochemistry
cloud-native-applications
immunohistochemical-images
Created
2021-04-15
500 commits to main branch, last one 18 days ago
Interoperable web-based DICOM slide microscopy viewer and annotation tool
Created
2021-02-02
199 commits to master branch, last one 10 days ago
⚡ Open-source software for deep learning-based digital pathology
Created
2019-07-09
491 commits to master branch, last one 6 months ago
Stain normalization tools for histological analysis and computational pathology
Created
2020-12-22
188 commits to main branch, last one about a year ago
PAthological QUpath Obsession - QuPath and Python conversations
Created
2020-07-06
624 commits to main branch, last one 2 days ago
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Created
2023-04-17
12 commits to main branch, last one about a year ago
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep...
Created
2019-01-11
290 commits to master branch, last one 3 years ago
TiffSlide - cloud native openslide-python replacement based on tifffile
Created
2021-03-18
393 commits to main branch, last one 10 months ago
Encoder-Decoder Cell and Nuclei segmentation models
Created
2022-01-22
344 commits to main branch, last one 5 months ago
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Created
2017-09-11
47 commits to master branch, last one 2 years ago
Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)
Created
2023-11-12
30 commits to main branch, last one 2 months ago
Cytomine-Core is the main web server implementing the Cytomine API
Created
2014-02-01
3,900 commits to master branch, last one about a year ago
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
Created
2021-02-04
141 commits to histo branch, last one 2 years ago
🔬 Code-free deep segmentation for computational pathology
Created
2021-09-30
265 commits to main branch, last one 6 months ago
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
Created
2019-10-09
251 commits to master branch, last one 11 days ago
DeeperHistReg - Source Code
Created
2022-08-23
11 commits to main branch, last one 7 months ago
Python package for reading DICOM WSI file sets.
Created
2021-05-11
401 commits to main branch, last one 29 days ago