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Open source tools for computational pathology - Nature BME
Created
2020-04-01
121 commits to master branch, last one 3 months ago
QuPath - Open-source bioimage analysis for research
Created
2016-08-28
4,431 commits to main branch, last one a day ago
A framework for high-performance medical image processing, neural network inference and visualization
Created
2014-03-18
3,846 commits to master branch, last one 11 days ago
A general-purpose foundation model for computational pathology - Nature Medicine
Created
2024-02-02
34 commits to main branch, last one 2 days ago
Tools for computational pathology
Created
2019-07-31
1,385 commits to master branch, last one about a month ago
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Created
2020-05-28
712 commits to develop branch, last one 21 days ago
Library for Digital Pathology Image Processing
Created
2020-05-09
1,518 commits to main branch, last one 4 days ago
cuCIM - RAPIDS GPU-accelerated image processing library
Created
2021-04-09
580 commits to branch-25.04 branch, last one 2 days ago
A vision-language foundation model for computational pathology - Nature Medicine
Created
2023-12-31
17 commits to main branch, last one 2 days ago
Digital pathology image viewer with support for human/machine generated annotations and markups.
Created
2016-08-14
3,259 commits to master branch, last one about a month ago
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
pytorch
ai-ready
datasets
multiplex
pathology
stitching
cell-biology
segmentation
deep-learning
pathology-gan
pathology-image
super-resolution
cell-segmentation
digital-pathology
image-segmentation
multitask-learning
whole-slide-imaging
immunohistochemistry
cloud-native-applications
immunohistochemical-images
Created
2021-04-15
507 commits to main branch, last one 8 days ago
Stain normalization tools for histological analysis and computational pathology
Created
2020-12-22
250 commits to main branch, last one 2 months ago
Interoperable web-based DICOM slide microscopy viewer and annotation tool
Created
2021-02-02
218 commits to master branch, last one 2 days ago
⚡ Open-source software for deep learning-based digital pathology
Created
2019-07-09
491 commits to master branch, last one 9 months ago
PAthological QUpath Obsession - QuPath and Python conversations
Created
2020-07-06
624 commits to main branch, last one 3 months ago
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Created
2023-04-17
12 commits to main branch, last one about a year ago
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep...
Created
2019-01-11
290 commits to master branch, last one 3 years ago
TiffSlide - cloud native openslide-python replacement based on tifffile
Created
2021-03-18
412 commits to main branch, last one 21 days ago
Encoder-Decoder Cell and Nuclei segmentation models
Created
2022-01-22
433 commits to main branch, last one about a month ago
Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)
Created
2023-11-12
31 commits to main branch, last one 23 days ago
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Created
2017-09-11
47 commits to master branch, last one 2 years ago
Cytomine-Core is the main web server implementing the Cytomine API
Created
2014-02-01
3,900 commits to master branch, last one 2 years ago
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
Created
2021-02-04
141 commits to histo branch, last one 3 years ago
🔬 Code-free deep segmentation for computational pathology
Created
2021-09-30
265 commits to main branch, last one 9 months ago
DeeperHistReg - Source Code
Created
2022-08-23
11 commits to main branch, last one 11 months ago
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
Created
2019-10-09
251 commits to master branch, last one 3 months ago
Awesome List of Digital and Computational Pathology Resources
Created
2023-06-06
158 commits to main branch, last one 2 months ago
Python package for reading DICOM WSI file sets.
Created
2021-05-11
416 commits to main branch, last one 15 days ago
Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms
Created
2023-08-17
91 commits to main branch, last one about a year ago