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QuPath - Open-source bioimage analysis for research
Created
2016-08-28
4,103 commits to main branch, last one a day ago
StarDist - Object Detection with Star-convex Shapes
Created
2018-06-26
950 commits to main branch, last one 4 months ago
A vision-language foundation model for computational pathology - Nature Medicine
Created
2023-12-31
14 commits to main branch, last one 4 months ago
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Created
2020-03-18
1,854 commits to master branch, last one 2 months ago
AI-based pathology predicts origins for cancers of unknown primary - Nature
Created
2020-06-19
26 commits to master branch, last one 3 years ago
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Created
2022-03-20
133 commits to main branch, last one 2 months ago
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Created
2019-10-18
1,435 commits to master branch, last one a day ago
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Created
2021-05-31
69 commits to main branch, last one about a year ago
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Created
2014-05-06
3,230 commits to master branch, last one 22 days ago
A deep-learning pipeline for segmentation of ambiguous microscopic images.
Created
2020-02-03
486 commits to master branch, last one 4 months ago
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
Created
2018-11-23
423 commits to master branch, last one about a year ago
computer vision models for single-cell phenotyping
Created
2023-05-30
125 commits to main branch, last one 18 days ago