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QuPath - Bioimage analysis & digital pathology
Created
2016-08-28
3,573 commits to main branch, last one 2 days ago
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Created
2020-04-01
119 commits to master branch, last one 2 months ago
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
Created
2022-06-06
89 commits to master branch, last one 3 months ago
Tools for computational pathology
Created
2019-07-31
1,011 commits to master branch, last one 2 months ago
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Created
2020-05-28
665 commits to develop branch, last one 3 days ago
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Created
2019-09-13
2,697 commits to master branch, last one 3 months ago
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Created
2024-02-02
20 commits to main branch, last one 13 days ago
A vision-language foundation model for computational pathology - Nature Medicine
Created
2023-12-31
10 commits to main branch, last one 2 months ago
Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀
Created
2023-09-01
60 commits to main branch, last one 5 months ago
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)
Created
2022-03-03
77 commits to master branch, last one 2 years ago
⚡ Open-source software for deep learning-based digital pathology
Created
2019-07-09
491 commits to master branch, last one 14 days ago
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
Created
2020-04-07
36 commits to master branch, last one 2 years ago
Stain normalization tools for histological analysis and computational pathology
Created
2020-12-22
188 commits to main branch, last one about a year ago
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Created
2021-09-07
627 commits to main branch, last one 4 days ago
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Created
2023-04-17
12 commits to main branch, last one about a year ago
Cytomine-Core is the main web server implementing the Cytomine API
Created
2014-02-01
3,900 commits to master branch, last one about a year ago
HEST: Bringing Spatial Transcriptomics and Histopathology together
Created
2024-03-04
7 commits to main branch, last one 3 days ago
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
Created
2022-07-27
54 commits to master branch, last one about a year ago
[CVPR'23] Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning
Created
2023-03-15
9 commits to main branch, last one 10 months ago
A pipeline to segment tissue from the background in histological images
Created
2018-11-14
141 commits to master branch, last one 3 years ago
:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
Created
2018-02-08
191 commits to master branch, last one 4 years ago
MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.
Created
2022-06-19
3 commits to master branch, last one 2 years ago
Python 3 library for the augmentation & normalization of H&E images
Created
2020-11-17
25 commits to main branch, last one about a year ago
WSI classification
Created
2023-11-12
20 commits to main branch, last one 2 months ago