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379

1.2k

gpl-3.0

22

Open source tools for computational pathology - Nature BME

clam pathology tcga-data camelyon16 camelyon17 mahmoodlab deep-learning data-efficient histopathology digital-pathology whole-slide-imaging bioimage-informatics quantitative-pathology computational-pathology weakly-supervised-learning

Created 2020-04-01

121 commits to master branch, last one about a month ago

115

302

unknown

24

TCGAbiolinks

r gdc bioc tcga tcga-data bioconductor tcgabiolinks integrative-analysis

Created 2015-03-02

28,950 commits to master branch, last one 9 days ago

34

129

agpl-3.0

2

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

wsi tcga miccai pathology tcga-data segmentation data-efficient histopathology medical-imaging image-segmentation tumor-segmentation whole-slide-imaging computational-pathology slide-image-segmentation multiple-instance-learning weakly-supervised-learning

Created 2020-04-07

36 commits to master branch, last one 3 years ago

24

90

mit

5

R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

maf ccle maftools mutations tcga-data somatic-variants

Created 2017-10-04

20 commits to master branch, last one 4 months ago

10

49

mit

6

Explore the cancer relevance of your gene list

cancer genesets proteins tcga-data co-expression crispr-target prioritization cancer-survival report-generator protein-complexes cancer-hallmark-evidence disease-gene-association high-throughput-screening tissue-enrichment-analysis pathway-enrichment-analysis protein-protein-interaction functional-enrichment-analysis

Created 2019-11-21

320 commits to main branch, last one 4 months ago