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QuPath - Bioimage analysis & digital pathology
Created
2016-08-28
3,573 commits to main branch, last one 2 days ago
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Created
2020-04-01
119 commits to master branch, last one 2 months ago
Cancer metastasis detection with neural conditional random field (NCRF)
Created
2018-06-04
60 commits to master branch, last one 3 years ago
The PatchCamelyon (PCam) deep learning classification benchmark.
Created
2018-05-28
14 commits to master branch, last one 4 months ago
C library for reading virtual slide images
Created
2010-08-09
2,627 commits to main branch, last one 18 days ago
Tools for computational pathology
Created
2019-07-31
1,011 commits to master branch, last one 2 months ago
Library for Digital Pathology Image Processing
Created
2020-05-09
1,477 commits to main branch, last one 2 months ago
Fusing Histology and Genomics via Deep Learning - IEEE TMI
Created
2019-12-14
46 commits to master branch, last one about a year ago
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extra...
Created
2023-02-15
100 commits to main branch, last one 9 months ago
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
Created
2019-11-27
1,890 commits to main branch, last one 8 months ago
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Created
2019-09-13
2,697 commits to master branch, last one 3 months ago
Towards a general-purpose foundation model for computational pathology - Nature Medicine
Created
2024-02-02
20 commits to main branch, last one 13 days ago
cGAN-based Multi Organ Nuclei Segmentation
Created
2018-09-13
26 commits to master branch, last one 2 years ago
A vision-language foundation model for computational pathology - Nature Medicine
Created
2023-12-31
10 commits to main branch, last one 2 months ago
AI-based pathology predicts origins for cancers of unknown primary - Nature
Created
2020-06-19
26 commits to master branch, last one 2 years ago
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
pytorch
ai-ready
datasets
multiplex
pathology
stitching
cell-biology
segmentation
deep-learning
pathology-gan
pathology-image
super-resolution
cell-segmentation
digital-pathology
image-segmentation
multitask-learning
whole-slide-imaging
immunohistochemistry
cloud-native-applications
immunohistochemical-images
Created
2021-04-15
443 commits to main branch, last one 3 days ago
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
Created
2021-04-16
29 commits to master branch, last one 2 years ago
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
Created
2020-04-07
36 commits to master branch, last one 2 years ago
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Created
2021-05-21
37 commits to master branch, last one 5 months ago
MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
Created
2021-04-22
336 commits to main branch, last one 14 days ago
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Created
2021-05-31
69 commits to main branch, last one about a year ago
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Created
2021-09-07
627 commits to main branch, last one 4 days ago
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
Created
2023-04-17
12 commits to main branch, last one about a year ago
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
Created
2023-04-13
22 commits to main branch, last one 3 months ago
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
Created
2022-08-19
160 commits to main branch, last one 4 months ago
Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
Created
2024-03-17
76 commits to main branch, last one about a month ago
Python 3 library for the augmentation & normalization of H&E images
Created
2020-11-17
25 commits to main branch, last one about a year ago
Raccoon is a NoSQL-based medical image archive for managing the DICOM images.
Created
2020-11-20
327 commits to main branch, last one 7 months ago
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
Created
2020-09-03
1 commits to master branch, last one 3 years ago
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Created
2024-03-24
3 commits to main branch, last one about a month ago