Search Results - RepositoryStats

136

476

gpl-3.0

17

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for ...

wsi lung cancer resnet microscopy pathology-image sliding-windows histopathology-images medical-image-analysis

Created 2018-12-26

100 commits to master branch, last one 21 days ago

bioformats ome

241

370

gpl-2.0

30

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Publ...

wsi java image metadata lightsheet bio-formats format-reader format-converter life-sciences-image whole-slide-imaging

Created 2011-10-04

22,075 commits to develop branch, last one 10 days ago

histolab histolab

54

345

apache-2.0

6

Library for Digital Pathology Image Processing

wsi python biology research pathology data-science hacktoberfest bioinformatics science-research digital-pathology digital-pathology-data

Created 2020-05-09

1,477 commits to main branch, last one 2 months ago

tcga_segmentation MarvinLer

35

114

agpl-3.0

2

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

wsi tcga miccai pathology tcga-data segmentation data-efficient histopathology medical-imaging image-segmentation tumor-segmentation whole-slide-imaging computational-pathology slide-image-segmentation multiple-instance-learning weakly-supervised-learning

Created 2020-04-07

36 commits to master branch, last one 2 years ago

Patch-GCN mahmoodlab

29

106

gpl-3.0

4

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

gcn wsi pathology mahmoodlab wsi-images histopathology survival-prediction

Created 2021-05-21

37 commits to master branch, last one 5 months ago

bluelight cylab-tw

42

102

mit

7

a browser-based DICOM viewer

wsi rtss dicom html5 orthanc dicomweb bluelight dicom-server dicom-viewer dicom-overlay dicom-web-viewer whole-slide-imaging

Created 2020-04-01

218 commits to master branch, last one 6 months ago

pathology-whole-slide-data DIAGNijmegen

24

84

apache-2.0

6

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

wsa wsd wsi wsm python iterator pathology deep-learning histopathology whole-slide-data whole-slide-mask whole-slide-image whole-slide-dataset whole-slide-imaging whole-slide-annotation computational-pathology

Created 2021-09-07

627 commits to main branch, last one 4 days ago