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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for ...
Created
2018-12-26
100 commits to master branch, last one 3 months ago
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Created
2019-04-30
7,534 commits to master branch, last one 25 days ago
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Created
2014-09-26
532 commits to bloody branch, last one 4 years ago
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Created
2016-07-07
43 commits to master branch, last one 11 months ago
Personal Cancer Genome Reporter (PCGR)
Created
2017-03-20
1,173 commits to main branch, last one about a month ago
Fast and accurate gene fusion detection from RNA-Seq data
Created
2017-10-23
694 commits to master branch, last one about a year ago
This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
Created
2020-03-28
76 commits to master branch, last one 3 years ago
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Created
2018-04-10
7,846 commits to master branch, last one 2 years ago
Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
Created
2020-11-07
305 commits to main branch, last one 3 years ago
A list of web-based interactive biological data visualizations.
Created
2018-05-27
77 commits to main branch, last one 3 years ago
Detect and visualize target mutations by scanning FastQ files directly
Created
2016-07-23
259 commits to master branch, last one 2 years ago
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
Created
2020-10-26
46 commits to master branch, last one 2 years ago
Gene fusion detection and visualization
Created
2017-01-20
156 commits to master branch, last one 2 years ago
A Slicer extension to provide a GUI around pyradiomics
Created
2016-12-02
146 commits to master branch, last one 5 months ago
This repository has no description...
Created
2018-01-17
74 commits to master branch, last one 4 years ago
BioDynaMo is a high-performance and modular, agent-based simulation platform.
Created
2016-02-11
1,757 commits to master branch, last one 9 days ago
Opensource radiation treatment planning system in Python [AAPM'23]
Created
2022-08-31
250 commits to master branch, last one 2 months ago
Provide R access to the NCI Genomic Data Commons portal.
Created
2016-06-08
614 commits to devel branch, last one a day ago
Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
Created
2020-08-19
744 commits to master branch, last one 11 months ago
Notebooks for working with The Cancer Imaging Archive datasets
Created
2022-02-08
353 commits to main branch, last one a day ago
Python package to annotate and visualize gene fusions.
Created
2016-10-03
283 commits to master branch, last one about a year ago
Cancer Predisposition Sequencing Reporter (CPSR)
Created
2018-08-16
303 commits to main branch, last one about a month ago
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Created
2019-03-06
613 commits to master branch, last one 2 days ago
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Created
2014-08-15
3,870 commits to staging branch, last one 2 years ago
Explore the cancer relevance of your gene list
cancer
genesets
proteins
tcga-data
co-expression
crispr-target
prioritization
cancer-survival
report-generator
protein-complexes
cancer-hallmark-evidence
disease-gene-association
high-throughput-screening
tissue-enrichment-analysis
pathway-enrichment-analysis
protein-protein-interaction
functional-enrichment-analysis
Created
2019-11-21
320 commits to main branch, last one 19 days ago
Cancer Whitepaper
Created
2021-02-26
144 commits to main branch, last one about a year ago
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
Created
2022-05-30
170 commits to master branch, last one 10 days ago
Multi-task deep learning framework for multi-omics data analysis
Created
2021-01-29
25 commits to main branch, last one 2 years ago