deepomicslab / SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

Date Created 2021-05-07 (3 years ago)

Commits 337 (last one 2 months ago)

Stargazers 39 (0 this week)

Watchers 3 (0 this week)

Forks 9

License mit

Ranking

RepositoryStats indexes 595,856 repositories, of these deepomicslab/SpecHLA is ranked #526,216 (12th percentile) for total stargazers, and #427,587 for total watchers. Github reports the primary language for this repository as C++, for repositories using this language it is ranked #28,814/31,836.

Other Information

deepomicslab/SpecHLA has Github issues enabled, there are 10 open issues and 32 closed issues.

There have been 7 releases, the latest one was published on 2024-09-25 (2 months ago) with the name SpecHLA v1.0.7.

All Topics

loh phase cancer immunity nanopore haplotype hla-typing pacbio-data hla-sequence reads-binning local-assembly allelic-imbalance genotype-frequency loss-of-heterozygosity human-leukocyte-antigens

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318 commits on the default branch (master) since jan '22

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The primary language is C++ but there's also others...

updated: 2024-12-18 @ 11:28pm, id: 365199742 / R_kgDOFcSBfg