2 results found Sort:

bcgsc
HLAminer bcgsc
15
51
other
8
⛏ HLA predictions from NGS shotgun data
alignments hla-sequence hla-prediction oxford-nanopore targeted-assemblies shotgun-sequence-datasets
This repository has been archived (exclude archived)
Created 2014-09-23
64 commits to master branch, last one 5 months ago
deepomicslab
SpecHLA deepomicslab
9
38
mit
3
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read da...
loh phase cancer immunity nanopore haplotype hla-typing pacbio-data hla-sequence reads-binning local-assembly allelic-imbalance genotype-frequency loss-of-heterozygosity human-leukocyte-antigens
Created 2021-05-07
337 commits to master branch, last one about a month ago