15 results found Sort:

53
369
gpl-3.0
14
Fast and accurate de novo assembler for long reads
Created 2019-01-09
111 commits to master branch, last one 6 months ago
40
293
mit
22
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Created 2016-09-01
668 commits to master branch, last one 3 years ago
Long read based human genomic structural variation detection with cuteSV
Created 2018-09-11
294 commits to master branch, last one 5 months ago
PEPPER-Margin-DeepVariant
Created 2019-05-10
1,281 commits to r0.8 branch, last one 2 years ago
57
244
other
18
Nanopore sequence read simulator
Created 2015-11-05
360 commits to master branch, last one 15 days ago
34
169
gpl-3.0
14
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Created 2019-11-08
406 commits to main branch, last one 2 months ago
Technology agnostic long read analysis pipeline for transcriptomes
Created 2018-04-03
744 commits to master branch, last one 10 months ago
112
125
mit
106
Assembly and intrahost/low-frequency variant calling for viral samples
Created 2020-03-30
2,788 commits to master branch, last one about a year ago
16
92
gpl-3.0
24
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Created 2016-06-06
272 commits to master branch, last one 14 days ago
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Created 2017-08-08
400 commits to master branch, last one 9 months ago
A Python library to visualize and analyze long-read transcriptomes
Created 2019-11-19
541 commits to master branch, last one 8 months ago
15
51
other
8
⛏ HLA predictions from NGS shotgun data
This repository has been archived (exclude archived)
Created 2014-09-23
64 commits to master branch, last one 5 months ago
14
49
gpl-3.0
4
A versatile compressor of third generation sequencing reads.
Created 2021-06-17
22 commits to master branch, last one 11 months ago
A pipeline for high-quality bacterial genome construction using ONT sequencing
Created 2021-01-15
53 commits to main branch, last one 2 years ago
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Created 2023-02-26
201 commits to master branch, last one 2 months ago