Search Results - RepositoryStats

NextDenovo Nextomics

52

350

gpl-3.0

14

Fast and accurate de novo assembler for long reads

pacbio assembler long-reads genome-assembly oxford-nanopore

Created 2019-01-09

111 commits to master branch, last one about a month ago

ngmlr philres

41

284

mit

22

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing

Created 2016-09-01

668 commits to master branch, last one 2 years ago

cuteSV tjiangHIT

33

237

mit

6

Long read based human genomic structural variation detection with cuteSV

pacbio-data oxford-nanopore structural-variation

Created 2018-09-11

294 commits to master branch, last one 29 days ago

pepper kishwarshafin

41

231

mit

10

PEPPER-Margin-DeepVariant

nanopore variants long-reads pacbio-ccs oxford-nanopore variant-calling genome-variation assembly-polishing

Created 2019-05-10

1,281 commits to r0.8 branch, last one about a year ago

NanoSim bcgsc

51

217

other

16

Nanopore sequence read simulator

genome simulator transcriptome oxford-nanopore nanopore-sequencing

Created 2015-11-05

343 commits to master branch, last one 6 months ago

readfish LooseLab

30

162

gpl-3.0

14

CLI tool for flexible and fast adaptive sampling on ONT sequencers

ont genomics sequencing bioinformatics oxford-nanopore adaptive-sampling

Created 2019-11-08

400 commits to main branch, last one about a month ago

TALON mortazavilab

29

131

mit

5

Technology agnostic long read analysis pipeline for transcriptomes

pacbio transcriptome oxford-nanopore transcript-quantification

Created 2018-04-03

744 commits to master branch, last one 5 months ago

viralrecon nf-core

103

111

mit

101

Assembly and intrahost/low-frequency variant calling for viral samples

ont artic viral virus covid19 nf-core amplicon assembly covid-19 illumina nanopore nextflow pipeline workflow sars-cov-2 metagenomics oxford-nanopore variant-calling long-read-sequencing

Created 2020-03-30

2,788 commits to master branch, last one about a year ago

arcs bcgsc

16

90

gpl-3.0

25

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

graph genome science scaffold assembler 10xgenomics c-plus-plus pacbio-data bioinformatics oxford-nanopore nanopore-sequencing

Created 2016-06-06

268 commits to master branch, last one 3 months ago

TranscriptClean mortazavilab

17

61

mit

6

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

sam pacbio oxford-nanopore

Created 2017-08-08

400 commits to master branch, last one 5 months ago

swan_vis mortazavilab

11

52

mit

4

A Python library to visualize and analyze long-read transcriptomes

pacbio long-read transcriptome bioinformatics pacbio-iso-seq oxford-nanopore

Created 2019-11-19

541 commits to master branch, last one 3 months ago

HLAminer bcgsc

15

50

other

8

⛏ HLA predictions from NGS shotgun data

alignments hla-sequence hla-prediction oxford-nanopore targeted-assemblies shotgun-sequence-datasets

This repository has been archived (exclude archived)

Created 2014-09-23

64 commits to master branch, last one 19 days ago

colord refresh-bio

11

46

gpl-3.0

4

A versatile compressor of third generation sequencing reads.

pac-bio genomics long-reads sequencing compression fastq-files bioinformatics oxford-nanopore

Created 2021-06-17

22 commits to master branch, last one 6 months ago

micropipe BeatsonLab-MicrobialGenomics

9

38

gpl-3.0

9

A pipeline for high-quality bacterial genome construction using ONT sequencing

genome-assembly oxford-nanopore microbial-genomics long-read-sequencing bioinformatics-pipeline nanopore-analysis-pipeline

Created 2021-01-15

53 commits to main branch, last one about a year ago