16 results found Sort:
- Filter by Primary Language:
- Python (8)
- C++ (3)
- C (1)
- Nextflow (1)
- Perl (1)
- Jupyter Notebook (1)
- HTML (1)
- +
Fast and accurate de novo assembler for long reads
Created
2019-01-09
111 commits to master branch, last one 10 months ago
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Created
2016-09-01
668 commits to master branch, last one 3 years ago
Nanopore sequence read simulator
Created
2015-11-05
364 commits to master branch, last one 29 days ago
Long read based human genomic structural variation detection with cuteSV
Created
2018-09-11
302 commits to master branch, last one 18 days ago
PEPPER-Margin-DeepVariant
Created
2019-05-10
1,281 commits to r0.8 branch, last one 2 years ago
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Created
2019-11-08
407 commits to main branch, last one 2 months ago
Technology agnostic long read analysis pipeline for transcriptomes
Created
2018-04-03
744 commits to master branch, last one about a year ago
Assembly and intrahost/low-frequency variant calling for viral samples
Created
2020-03-30
2,788 commits to master branch, last one 2 years ago
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Created
2016-06-06
272 commits to master branch, last one 4 months ago
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Created
2017-08-08
400 commits to master branch, last one about a year ago
De novo clustering of long transcript reads into genes
Created
2018-10-26
90 commits to master branch, last one 3 years ago
A Python library to visualize and analyze long-read transcriptomes
Created
2019-11-19
541 commits to master branch, last one about a year ago
⛏ HLA predictions from NGS shotgun data
Created
2014-09-23
73 commits to master branch, last one 3 days ago
A versatile compressor of third generation sequencing reads.
Created
2021-06-17
22 commits to master branch, last one about a year ago
A pipeline for high-quality bacterial genome construction using ONT sequencing
Created
2021-01-15
53 commits to main branch, last one 2 years ago
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Created
2023-02-26
203 commits to master branch, last one about a month ago