Search Results - RepositoryStats

MultiQC MultiQC

602

1.2k

gpl-3.0

35

Aggregate results from bioinformatics analyses across many samples into a single report.

pypi python seqera multiqc analysis bioconda reporting vizualisation bioinformatics quality-control data-visualization

Created 2015-08-04

6,597 commits to main branch, last one 7 days ago

Sniffles fritzsedlazeck

93

559

other

26

Structural variation caller using third generation sequencing

ngm-lr pacbio bioconda nanopore bioinformatics structural-variation structural-variations

Created 2015-10-25

359 commits to master branch, last one 2 days ago

bactopia bactopia

69

412

mit

14

A flexible pipeline for complete analysis of bacterial genomes

conda fastqs bioconda nextflow bacterial-genomes

Created 2019-02-22

1,556 commits to master branch, last one about a month ago

genomepy vanheeringen-lab

37

380

mit

6

genes and genomes at your fingertips

ncbi ucsc genome python ensembl bioconda

Created 2016-12-16

769 commits to master branch, last one about a month ago

SURVIVOR fritzsedlazeck

47

355

mit

12

Toolset for SV simulation, comparison and filtering

vcf bioconda survivor simulator comparison bioinformatics structural-variations

Created 2015-10-27

180 commits to master branch, last one 11 months ago

ngmlr philres

40

292

mit

22

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing

Created 2016-09-01

668 commits to master branch, last one 3 years ago

run_dbcan linnabrown

40

144

gpl-3.0

7

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

dbcan docker anaconda bioconda database webserver bioinformatics

Created 2018-12-24

441 commits to master branch, last one 6 months ago

pyrodigal althonos

5

141

gpl-3.0

7

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

simd genome python bioconda prodigal orf-finder metagenomes gene-finding bioinformatics cython-wrapper python-library python-interface

Created 2020-04-26

844 commits to main branch, last one a day ago

seqfu2 telatin

7

110

gpl-3.0

3

:rocket: seqfu - Sequece Fastx Utilities

ngs fasta fastq bioconda genomics sequencing bioinformatics bioinformatics-tool

Created 2020-11-26

592 commits to main branch, last one 22 days ago

pyrpipe urmi-21

27

81

mit

7

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

conda python rna-seq bioconda ncbi-sra bioinformatics rna-seq-pipeline rna-seq-workflows bioinformatics-analysis bioinformatics-pipeline

Created 2019-11-23

816 commits to master branch, last one 3 years ago

CompareM2 cmkobel

3

54

gpl-3.0

3

🦠📇 Microbial genomes-to-report pipeline

hpc pbs conda slurm archaea bacteria bioconda apptainer snakemake prokaryotes metagenomics bioinformatics clinical-research genomes-to-report microbial-genomics

Created 2019-12-10

1,796 commits to master branch, last one 6 days ago