Search Results - RepositoryStats

MultiQC MultiQC

614

1.3k

gpl-3.0

34

Aggregate results from bioinformatics analyses across many samples into a single report.

pypi python seqera multiqc analysis bioconda reporting vizualisation bioinformatics quality-control data-visualization

Created 2015-08-04

6,738 commits to main branch, last one 3 days ago

Sniffles fritzsedlazeck

96

583

other

27

Structural variation caller using third generation sequencing

ngm-lr pacbio bioconda nanopore bioinformatics structural-variation structural-variations

Created 2015-10-25

430 commits to master branch, last one 5 hours ago

bactopia bactopia

74

445

mit

16

A flexible pipeline for complete analysis of bacterial genomes

conda fastqs bioconda nextflow bacterial-genomes

Created 2019-02-22

1,632 commits to master branch, last one 3 days ago

genomepy vanheeringen-lab

38

386

mit

5

genes and genomes at your fingertips

ncbi ucsc genome python ensembl bioconda

Created 2016-12-16

770 commits to master branch, last one 3 months ago

SURVIVOR fritzsedlazeck

48

374

mit

12

Toolset for SV simulation, comparison and filtering

vcf bioconda survivor simulator comparison bioinformatics structural-variations

Created 2015-10-27

180 commits to master branch, last one about a year ago

ngmlr philres

40

297

mit

21

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

docker mapper pacbio bioconda alignment long-read oxford-nanopore structural-variations next-generation-sequencing

Created 2016-09-01

668 commits to master branch, last one 3 years ago

pyrodigal althonos

9

152

gpl-3.0

6

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

simd genome python bioconda prodigal orf-finder metagenomes gene-finding bioinformatics cython-wrapper python-library python-interface

Created 2020-04-26

854 commits to main branch, last one 12 days ago

run_dbcan linnabrown

41

150

gpl-3.0

6

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

dbcan docker anaconda bioconda database webserver bioinformatics

Created 2018-12-24

441 commits to master branch, last one 10 months ago

seqfu2 telatin

9

113

gpl-3.0

3

:rocket: seqfu - Sequece Fastx Utilities

ngs fasta fastq bioconda genomics sequencing bioinformatics bioinformatics-tool

Created 2020-11-26

595 commits to main branch, last one 2 months ago

pyrpipe urmi-21

27

82

mit

6

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

conda python rna-seq bioconda ncbi-sra bioinformatics rna-seq-pipeline rna-seq-workflows bioinformatics-analysis bioinformatics-pipeline

Created 2019-11-23

816 commits to master branch, last one 3 years ago

CompareM2 cmkobel

3

56

gpl-3.0

2

🦠📇 Microbial genomes-to-report pipeline

hpc pbs conda slurm archaea bacteria bioconda apptainer snakemake prokaryotes metagenomics bioinformatics clinical-research genomes-to-report microbial-genomics

Created 2019-12-10

1,967 commits to master branch, last one 19 days ago