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GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Created
2016-11-29
964 commits to master branch, last one 6 days ago
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Created
2014-05-15
421 commits to master branch, last one 7 months ago
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Created
2020-01-15
1,025 commits to main branch, last one 11 days ago
Build a partitioned pangenome graph from microbial genomes
Created
2017-10-20
2,215 commits to master branch, last one 3 months ago
Pan-genome wide association studies
Created
2016-02-03
232 commits to master branch, last one 7 years ago
BSR-Based Allele Calling Algorithm
Created
2017-08-04
1,388 commits to master branch, last one 3 days ago
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Created
2015-01-08
354 commits to master branch, last one 4 years ago
SEER, reimplemented in python 🐍🔮
Created
2017-09-22
543 commits to master branch, last one 4 months ago
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Created
2019-06-19
198 commits to main branch, last one about a month ago
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Created
2015-11-26
595 commits to master branch, last one 7 days ago
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Created
2020-07-28
4,413 commits to master branch, last one 5 days ago
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Created
2020-06-28
1,707 commits to master branch, last one 10 days ago
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Created
2018-01-09
2,414 commits to master branch, last one 27 days ago
A scalable bacterial genome assembly, annotation and analysis pipeline
Created
2017-08-06
281 commits to master branch, last one 2 years ago
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
Created
2014-06-06
7,500 commits to develop branch, last one 19 hours ago
🦠📇 Microbial genomes-to-report pipeline
Created
2019-12-10
1,967 commits to master branch, last one 5 days ago
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Created
2019-06-09
261 commits to master branch, last one 3 years ago
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
Created
2021-07-21
9 commits to main branch, last one 2 years ago