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Cloud-native genomic dataframes and batch computing
Created
2015-10-27
11,499 commits to main branch, last one 13 hours ago
A comprehensive tutorial about GWAS and PRS
Created
2015-11-27
127 commits to master branch, last one 4 years ago
An open-source toolkit for large-scale genomic analysis
Created
2019-10-04
483 commits to main branch, last one about a month ago
Scalable genetics toolkit
Created
2020-06-16
911 commits to main branch, last one 29 days ago
Codebook from my GWAS cookbook
Created
2015-02-03
282 commits to master branch, last one 2 years ago
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
Created
2016-08-03
2,420 commits to master branch, last one a day ago
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
Created
2017-03-16
112 commits to master branch, last one about a year ago
An R package for creating Q-Q and manhattan plots from GWAS results
Created
2013-04-02
109 commits to master branch, last one 9 months ago
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Created
2015-08-24
1,481 commits to develop branch, last one about a year ago
Pan-genome wide association studies
Created
2016-02-03
232 commits to master branch, last one 6 years ago
machine learning for genomic variants
Created
2017-01-22
577 commits to master branch, last one about a month ago
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Created
2020-02-24
3 commits to master branch, last one 11 months ago
Rare variant test software for next generation sequencing data
Created
2013-01-09
1,204 commits to master branch, last one 3 years ago
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
Created
2021-11-01
69 commits to main branch, last one 3 months ago
SEER, reimplemented in python 🐍🔮
Created
2017-09-22
526 commits to master branch, last one 6 months ago
Single-cell disease relevance score (scDRS)
Created
2020-07-10
321 commits to master branch, last one about a month ago
GWAS Tutorial for Beginners
Created
2022-09-29
471 commits to main branch, last one 10 days ago
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Created
2018-02-28
38 commits to master branch, last one about a year ago
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Created
2019-09-04
1,122 commits to main branch, last one 3 days ago
Python API for comprehensive GWAS analysis using GEMMA
Created
2021-05-10
373 commits to main branch, last one 8 months ago
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
Created
2019-10-31
448 commits to master branch, last one a day ago
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Created
2021-11-28
145 commits to master branch, last one 3 months ago
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
Created
2016-08-04
1,267 commits to master branch, last one 2 months ago
Find causal cell-types underlying complex trait genetics
Created
2018-05-04
235 commits to master branch, last one 14 days ago
Rapid standardisation and quality control of GWAS or QTL summary statistics
Created
2021-03-30
395 commits to master branch, last one about a month ago
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Created
2021-06-15
611 commits to main branch, last one 2 days ago
Causal Mixture Model for GWAS summary statistics
Created
2016-10-07
827 commits to master branch, last one 6 months ago
An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of summary statistics from the IEU GWAS database.
Created
2022-08-28
38 commits to main branch, last one about a year ago