13 results found Sort:

120
513
unknown
14
NicheNet: predict active ligand-target links between interacting cells
Created 2018-02-05
495 commits to master branch, last one 5 months ago
97
442
gpl-3.0
8
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Created 2022-03-30
308 commits to main branch, last one about a year ago
Papers with code for single cell related papers
Created 2020-07-27
32 commits to master branch, last one about a year ago
32
175
other
8
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
Created 2018-05-08
111 commits to master branch, last one 5 years ago
BANKSY: spatial clustering
Created 2021-05-23
271 commits to bioc branch, last one 6 months ago
Find causal cell-types underlying complex trait genetics
Created 2018-05-04
259 commits to master branch, last one 4 months ago
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
Created 2017-10-02
295 commits to master branch, last one 3 years ago
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73
other
3
Simulating single-cell data using gene regulatory networks 📠
Created 2017-03-10
1,169 commits to master branch, last one 2 years ago
10
61
gpl-3.0
4
R Package for Single-Cell Dataset Processing and Visualization
Created 2019-08-22
192 commits to master branch, last one 3 years ago
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46
apache-2.0
9
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Created 2019-01-11
48 commits to master branch, last one 3 years ago
1
34
bsd-3-clause
3
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
Created 2022-07-20
488 commits to master branch, last one 2 months ago
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
Created 2022-11-03
111 commits to main branch, last one about a month ago
A Julia package for single cell and spatial data analysis
Created 2022-12-26
1,005 commits to main branch, last one 5 months ago