4 results found Sort:

gustaveroussy
sopa gustaveroussy
8
93
bsd-3-clause
6
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
pipeline snakemake spatialdata spatial-omics generalization memory-management multiplexed-imaging spatial-transcriptomics
Created 2023-09-04
767 commits to master branch, last one 19 days ago
prabhakarlab
Banksy prabhakarlab
12
52
other
4
BANKSY: spatial clustering
spatial-omics single-cell-omics clustering-algorithm
Created 2021-05-23
263 commits to bioc branch, last one 25 days ago
wanglab-broad
ClusterMap wanglab-broad
11
39
gpl-3.0
1
ClusterMap for multi-scale clustering analysis of spatial gene expression
spatial-omics bioinformatics transcriptomics cell-segmentation in-situ-sequencing single-cell-analysis spatial-transcriptomics
Created 2021-09-29
74 commits to main branch, last one about a month ago
scverse
napari-spatialdata scverse
13
35
bsd-3-clause
10
Interactive visualization of spatial omics data
napari napari-plugin spatial-omics visualization spatial-analysis
Created 2022-04-02
275 commits to main branch, last one 4 days ago